Strain identifier

BacDive ID: 2064

Type strain: No

Species: Pandoraea oxalativorans

Strain Designation: TA02, TA2

Strain history: <- N. Sahin, Mugla University, Kötekli; TA2 <- A. Ü. Tamer, Celal Bayar University

NCBI tax ID(s): 573737 (species)

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General

@ref: 17293

BacDive-ID: 2064

DSM-Number: 23573

keywords: 16S sequence, Bacteria, mesophilic

description: Pandoraea oxalativorans TA02 is a mesophilic bacterium that was isolated from soil litter close to Rumex sp..

NCBI tax id

  • NCBI tax id: 573737
  • Matching level: species

strain history

  • @ref: 17293
  • history: <- N. Sahin, Mugla University, Kötekli; TA2 <- A. Ü. Tamer, Celal Bayar University

doi: 10.13145/bacdive2064.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Pandoraea
  • species: Pandoraea oxalativorans
  • full scientific name: Pandoraea oxalativorans Sahin et al. 2011

@ref: 17293

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Pandoraea

species: Pandoraea oxalativorans

full scientific name: Pandoraea oxalativorans Sahin et al. 2011

strain designation: TA02, TA2

type strain: no

Morphology

colony morphology

  • @ref: 17293
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

  • @ref: 17293
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 17293
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
17293--------+/-------+-++++/-

Isolation, sampling and environmental information

isolation

  • @ref: 17293
  • sample type: soil litter close to Rumex sp.
  • host species: Rumex
  • geographic location: Neuchatel
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_842.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_494;97_563;98_648;99_842&stattab=map
  • Last taxonomy: Pandoraea
  • 16S sequence: AB469784
  • Sequence Identity:
  • Total samples: 5711
  • soil counts: 2081
  • aquatic counts: 1255
  • animal counts: 1218
  • plant counts: 1157

Safety information

risk assessment

  • @ref: 17293
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17293
  • description: Pandoraea oxalativorans gene for 16S rRNA, partial sequence, strain: TA02
  • accession: AB469784
  • length: 1363
  • database: ena
  • NCBI tax ID: 573737

External links

@ref: 17293

culture collection no.: DSM 23573, CCM 7670, NBRC 106089, NEU 45

straininfo link

  • @ref: 71711
  • straininfo: 397682

Reference

@idauthorscataloguedoi/urltitle
17293Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23573)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23573
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71711Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397682.1StrainInfo: A central database for resolving microbial strain identifiers