Strain identifier

BacDive ID: 2054

Type strain: Yes

Species: Lautropia mirabilis

Strain Designation: AB2188

Strain history: CIP <- 1999, CCUG <- P. Gerner-Smidt, SSI, Copenhagen, Denmark: strain SSI AB 2188

NCBI tax ID(s): 887898 (strain), 47671 (species)

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General

@ref: 4310

BacDive-ID: 2054

DSM-Number: 11362

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Lautropia mirabilis AB2188 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from gingival margin of a healthy person.

NCBI tax id

NCBI tax idMatching level
887898strain
47671species

strain history

@refhistory
4310<- NCTC <- P. Gerner-Smidt <- C. R. Schiött
120967CIP <- 1999, CCUG <- P. Gerner-Smidt, SSI, Copenhagen, Denmark: strain SSI AB 2188

doi: 10.13145/bacdive2054.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Lautropia
  • species: Lautropia mirabilis
  • full scientific name: Lautropia mirabilis Gerner-Smidt et al. 1995

@ref: 4310

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Lautropia

species: Lautropia mirabilis

full scientific name: Lautropia mirabilis Gerner-Smidt et al. 1995

strain designation: AB2188

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shape
69480negative100
120967negativecoccus-shaped

colony morphology

  • @ref: 52327
  • incubation period: 3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4310REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a)yeshttps://mediadive.dsmz.de/medium/220aName: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) Composition: Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
4310TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf
39492MEDIUM 10 - Chocolate medium for Actinobacillus pleuropneumoniae, Capnocytophaga cynodegmi, Haemophilus and NeisseriayesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);PolyVitex mischung (10.000 ml)
120967CIP Medium 10yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=10

culture temp

@refgrowthtypetemperaturerange
4310positivegrowth37mesophilic
39492positivegrowth30mesophilic
52327nogrowth30mesophilic
52327positivegrowth37mesophilic
4310positivegrowth28mesophilic
120967positivegrowth25-41
120967nogrowth5psychrophilic
120967nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
52327aerobe
52327microaerophile
120967obligate aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.997

halophily

@refsaltgrowthtested relationconcentration
120967NaClpositivegrowth0 %
120967NaClnogrowth2 %
120967NaClnogrowth4 %
120967NaClnogrowth6 %
120967NaClnogrowth8 %
120967NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12096716947citrate-carbon source
1209674853esculin-hydrolysis
12096717632nitrate+reduction
12096716301nitrite+reduction
12096717632nitrate+respiration

antibiotic resistance

  • @ref: 120967
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 120967
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
120967oxidase+
120967beta-galactosidase-3.2.1.23
120967alcohol dehydrogenase-1.1.1.1
120967gelatinase-
120967amylase+
120967DNase-
120967caseinase-3.4.21.50
120967catalase+1.11.1.6
120967tween esterase-
120967lecithinase-
120967lipase-
120967lysine decarboxylase-4.1.1.18
120967ornithine decarboxylase-4.1.1.17
120967protease-
120967tryptophan deaminase-
120967urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120967-+-+-++---++---+----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
120967---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dateisolation date
4310gingival margin of a healthy personDenmarkDNKEurope
52327Human gingival margin of healthy person [6452]DenmarkDNKEurope1982
120967Human, Gingival marginDenmarkDNKEurope1982

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Gingiva

taxonmaps

  • @ref: 69479
  • File name: preview.99_8203.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_3772;97_4647;98_5968;99_8203&stattab=map
  • Last taxonomy: Lautropia mirabilis
  • 16S sequence: HF558380
  • Sequence Identity:
  • Total samples: 116283
  • soil counts: 7618
  • aquatic counts: 7711
  • animal counts: 98471
  • plant counts: 2483

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
43101Risk group (German classification)
1209671Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Lautropia mirabilis partial 16S rRNA gene, strain SSI AB 2188
  • accession: HF558380
  • length: 1504
  • database: ena
  • NCBI tax ID: 47671

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lautropia mirabilis NCTC12852GCA_900637555completencbi47671
66792Lautropia mirabilis ATCC 51599GCA_000186425scaffoldncbi887898
66792Lautropia mirabilis ATCC 51599887898.3wgspatric887898
66792Lautropia mirabilis strain NCTC1285247671.4completepatric47671
66792Lautropia mirabilis ATCC 51599649989970draftimg887898

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes56.063no
gram-positiveno98.992no
anaerobicno94.433no
aerobicno73.737no
halophileno89.247no
spore-formingno96.169no
thermophileno98.572yes
glucose-utilno61.884no
motileyes76.72no
glucose-fermentno76.103no

External links

@ref: 4310

culture collection no.: CCUG 34794, CIP 106317, DSM 11362, ATCC 51599, NCTC 12852, SSI AB 2188

straininfo link

  • @ref: 71701
  • straininfo: 46158

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity11682548Cellular fatty acid composition of Lautropia mirabilis.Daneshvar MI, Douglas MP, Weyant RSJ Clin Microbiol10.1128/JCM.39.11.4160-4162.20012001*Bacterial Typing Techniques, Betaproteobacteria/chemistry/*classification/genetics, Fatty Acids/*analysis, Gram-Negative Bacterial Infections/genetics/*microbiology, HumansPhylogeny
Phylogeny28950929Quisquiliibacterium transsilvanicum gen. nov., sp. nov., a novel betaproteobacterium isolated from a waste-treating bioreactor.Felfoldi T, Fiko RD, Mentes A, Kovacs E, Mathe I, Schumann P, Toth EInt J Syst Evol Microbiol10.1099/ijsem.0.0023682017Alcaligenaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Bioreactors/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Romania, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/chemistryTranscriptome
Phylogeny31446477Lautropia dentalis sp. nov., Isolated from Human Dental Plaque of a Gingivitis Lesion.Lim YK, Park SN, Lee WP, Shin JH, Jo E, Shin Y, Paek J, Chang YH, Kim H, Kook JKCurr Microbiol10.1007/s00284-019-01761-12019Bacterial Typing Techniques, Base Composition, Burkholderiaceae/classification/genetics/*isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Dental Plaque/*microbiology, Fatty Acids/chemistry/metabolism, Genome, Bacterial, Gingivitis/*microbiology, Humans, Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4310Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11362)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11362
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39492Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18435
52327Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 34794)https://www.ccug.se/strain?id=34794
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71701Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID46158.1StrainInfo: A central database for resolving microbial strain identifiers
120967Curators of the CIPCollection of Institut Pasteur (CIP 106317)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106317