Strain identifier
BacDive ID: 200
Type strain: 
Species: Arcanobacterium phocae
Strain Designation: M2464/93/8
Strain history: <- G. Foster, M2464/93/8
NCBI tax ID(s): 131112 (species)
version 8.1 (current version)
General
@ref: 3775
BacDive-ID: 200
DSM-Number: 10003
keywords: 16S sequence, Bacteria, mesophilic, animal pathogen
description: Arcanobacterium phocae M2464/93/8 is a mesophilic animal pathogen that was isolated from lung of common seal.
NCBI tax id
- NCBI tax id: 131112
- Matching level: species
strain history
- @ref: 3775
- history: <- G. Foster, M2464/93/8
doi: 10.13145/bacdive200.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Actinomycetales
- family: Actinomycetaceae
- genus: Arcanobacterium
- species: Arcanobacterium phocae
- full scientific name: Arcanobacterium phocae Pascual Ramos et al. 1997
@ref: 3775
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Actinomycetaceae
genus: Arcanobacterium
species: Arcanobacterium phocae
full scientific name: Arcanobacterium phocae Pascual Ramos et al. 1997 emend. Nouioui et al. 2018
strain designation: M2464/93/8
type strain: no
Culture and growth conditions
culture medium
- @ref: 3775
- name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104
- composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
culture temp
- @ref: 3775
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
murein
- @ref: 3775
- murein short key: A11.01
- type: A3alpha L-Lys-Gly
Isolation, sampling and environmental information
isolation
- @ref: 3775
- sample type: lung of common seal
- geographic location: Shetland Isles
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Canidae (Dog) |
| #Host Body-Site | #Oral cavity and airways | #Lung |
taxonmaps
- @ref: 69479
- File name: preview.99_45345.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_28;96_49;97_25893;98_32877;99_45345&stattab=map
- Last taxonomy: Arcanobacterium phocae
- 16S sequence: FN562995
- Sequence Identity:
- Total samples: 71
- soil counts: 1
- aquatic counts: 13
- animal counts: 56
- plant counts: 1
Safety information
risk assessment
- @ref: 3775
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Arcanobacterium phocae strain DSM 10003 16S ribosomal RNA gene and 16S-23S ribosomal RNA intergenic spacer, partial sequence | EU194566 | 528 | ena | 131112 |
| 20218 | Arcanobacterium phocae partial 16S rRNA gene, strain DSM 10003 | FN562995 | 1256 | ena | 131112 |
External links
@ref: 3775
culture collection no.: DSM 10003
straininfo link
- @ref: 69883
- straininfo: 48729
literature
- topic: Phylogeny
- Pubmed-ID: 29519524
- title: Identification of Arcanobacterium phocae isolated from fur animals by phenotypic properties, by MALDI-TOF MS analysis and by detection of phocaelysin encoding gene phl as probable novel target.
- authors: Alssahen M, Sammra O, Wickhorst JP, Hassan AA, Lammler C, Saarnisto MR, Prenger-Berninghoff E, Timke M, Becker A, Abdulmawjood A
- journal: Vet Microbiol
- DOI: 10.1016/j.vetmic.2018.01.017
- year: 2018
- mesh: Actinomycetales Infections/microbiology/*veterinary, Animals, Arcanobacterium/classification/*genetics/*isolation & purification, Bacterial Proteins/*genetics, Finland/epidemiology, Foxes/microbiology, Genotype, Mink/microbiology, *Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA/methods, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3775 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10003) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10003 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69883 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48729.1 | StrainInfo: A central database for resolving microbial strain identifiers |