Strain identifier
BacDive ID: 1994
Type strain: 
Species: Chitinimonas taiwanensis
Strain history: <- CCRC, Taiwan <- S.-C. Chang, Institute of Technol., Ping-Tung
NCBI tax ID(s): 1121279 (strain), 240412 (species)
version 8.1 (current version)
General
@ref: 7765
BacDive-ID: 1994
DSM-Number: 18899
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Chitinimonas taiwanensis DSM 18899 is a mesophilic, motile bacterium that was isolated from freshwater pond for shrimps.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 240412 | species |
| 1121279 | strain |
strain history
- @ref: 7765
- history: <- CCRC, Taiwan <- S.-C. Chang, Institute of Technol., Ping-Tung
doi: 10.13145/bacdive1994.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Chitinimonas
- species: Chitinimonas taiwanensis
- full scientific name: Chitinimonas taiwanensis Chang et al. 2004
@ref: 7765
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Chitinimonas
species: Chitinimonas taiwanensis
full scientific name: Chitinimonas taiwanensis Chang et al. 2004
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.432 | |
| 69480 | 99.992 | negative |
Culture and growth conditions
culture medium
- @ref: 7765
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 7765
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.994 |
Isolation, sampling and environmental information
isolation
- @ref: 7765
- sample type: freshwater pond for shrimps
- geographic location: Ping-Tung
- country: Taiwan
- origin.country: TWN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #Pond (small) |
| #Host | #Arthropoda | #Crustacea |
taxonmaps
- @ref: 69479
- File name: preview.99_7666.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16429;96_3564;97_4378;98_5607;99_7666&stattab=map
- Last taxonomy: Chitinimonas taiwanensis subclade
- 16S sequence: AY323827
- Sequence Identity:
- Total samples: 12426
- soil counts: 1748
- aquatic counts: 6142
- animal counts: 2319
- plant counts: 2217
Safety information
risk assessment
- @ref: 7765
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7765
- description: Chitinimonas taiwanensis strain cf 16S ribosomal RNA gene, partial sequence
- accession: AY323827
- length: 1542
- database: ena
- NCBI tax ID: 240412
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chitinimonas taiwanensis DSM 18899 | GCA_900119825 | scaffold | ncbi | 1121279 |
| 66792 | Chitinimonas taiwanensis DSM 18899 | 1121279.3 | wgs | patric | 1121279 |
| 66792 | Chitinimonas taiwanensis DSM 18899 | 2599185263 | draft | img | 1121279 |
GC content
- @ref: 7765
- GC-content: 62.8
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 86.631 | no |
| flagellated | yes | 83.55 | no |
| gram-positive | no | 98.126 | no |
| anaerobic | no | 98.843 | no |
| aerobic | yes | 89.768 | no |
| halophile | no | 95.882 | no |
| spore-forming | no | 94.225 | no |
| glucose-ferment | no | 88.488 | no |
| thermophile | no | 98.63 | no |
| glucose-util | yes | 85.759 | no |
External links
@ref: 7765
culture collection no.: DSM 18899, CCRC 17210, LMG 22011
straininfo link
- @ref: 71641
- straininfo: 132779
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15053320 | Chitinimonas taiwanensis gen. nov., sp. nov., a novel chitinolytic bacterium isolated from a freshwater pond for shrimp culture. | Chang SC, Wang JT, Vandamme P, Hwang JH, Chang PS, Chen WM | Syst Appl Microbiol | 10.1078/0723-2020-00252 | 2004 | Animals, Aquaculture, Base Composition, Base Sequence, Betaproteobacteria/enzymology/genetics/*isolation & purification/ultrastructure, Chitin/*metabolism, Chitinases/metabolism, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Microbial Sensitivity Tests, Microscopy, Electron, Molecular Sequence Data, Penaeidae/microbiology, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/chemistry/genetics, Sequence Alignment, *Water Microbiology | Enzymology |
| Phylogeny | 24907265 | Chitinimonas prasina sp. nov., isolated from lake water. | Li Y, Zhu H, Lai Q, Lei X, Chen Z, Zhang H, Tian Y, Zheng W, Zheng T | Int J Syst Evol Microbiol | 10.1099/ijs.0.061234-0 | 2014 | Bacterial Typing Techniques, Base Composition, Burkholderiaceae/*classification/genetics/isolation & purification, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Lakes/*microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7765 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18899) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18899 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 71641 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID132779.1 | StrainInfo: A central database for resolving microbial strain identifiers |