Strain identifier
BacDive ID: 1908
Type strain: 
Species: Burkholderia cepacia
Strain Designation: PB4
Strain history: <- R. Russ; PB4
NCBI tax ID(s): 292 (species)
version 8.1 (current version)
General
@ref: 4812
BacDive-ID: 1908
DSM-Number: 12775
keywords: Bacteria, mesophilic, human pathogen
description: Burkholderia cepacia PB4 is a mesophilic human pathogen that was isolated from soil from a former TNT-production site.
NCBI tax id
- NCBI tax id: 292
- Matching level: species
strain history
- @ref: 4812
- history: <- R. Russ; PB4
doi: 10.13145/bacdive1908.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Burkholderia
- species: Burkholderia cepacia
- full scientific name: Burkholderia cepacia (Palleroni and Holmes 1981 ex Burkholder 1950) Yabuuchi et al. 1993
synonyms
- @ref: 20215
- synonym: Pseudomonas cepacia
@ref: 4812
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Burkholderia
species: Burkholderia cepacia
full scientific name: Burkholderia cepacia (Palleroni and Holmes 1981) Yabuuchi et al. 1993
strain designation: PB4
type strain: no
Morphology
colony morphology
- @ref: 4812
- type of hemolysis: gamma
- incubation period: 1-2 days
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 4812 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | yes | https://mediadive.dsmz.de/medium/220 | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water |
| 4812 | MINERAL MEDIUM PH 7.25 (DSMZ Medium 465) | yes | https://mediadive.dsmz.de/medium/465 | Name: MINERAL MEDIUM PH 7.25 (DSMZ Medium 465; with strain-specific modifications) Composition: Na2HPO4 x 2 H2O 3.5 g/l KH2PO4 1.0 g/l 4-aminobenzoate 0.5 g/l (NH4)2SO4 0.5 g/l MgCl2 x 6 H2O 0.1 g/l Ca(NO3)2 x 4 H2O 0.05 g/l Na2-EDTA 0.0005 g/l H3BO3 0.0003 g/l FeSO4 x 7 H2O 0.0002 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Distilled water |
culture temp
- @ref: 4812
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 4812 | catalase | + | 1.11.1.6 |
| 4812 | cytochrome-c oxidase | + | 1.9.3.1 |
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4812 | + | - | - | - | - | - | - | + | + | - | + | + | + | - | + | + | + | + | +/- | + | |
| 4812 | + | - | - | - | - | - | - | + | + | + | + | + | + | - | + | + | - | + | - | + | + |
Isolation, sampling and environmental information
isolation
- @ref: 4812
- sample type: soil from a former TNT-production site
- geographic location: Hessen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | ||
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 4812
- pathogenicity human: yes
- pathogenicity animal: yes
- pathogenicity plant: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
External links
@ref: 4812
culture collection no.: DSM 12775
straininfo link
- @ref: 71553
- straininfo: 49353
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4812 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12775) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12775 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 68369 | Automatically annotated from API 20NE | |||
| 71553 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49353.1 | StrainInfo: A central database for resolving microbial strain identifiers |