Strain identifier
BacDive ID: 18065
Type strain: 
Species: Anaerovirgula multivorans
Strain Designation: SCA
Strain history: E. V. Pikuta strain SCA.
NCBI tax ID(s): 312168 (species)
version 8.1 (current version)
General
@ref: 6918
BacDive-ID: 18065
DSM-Number: 17722
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Anaerovirgula multivorans SCA is an anaerobe, mesophilic bacterium that was isolated from anoxic alkaline lake sediments.
NCBI tax id
- NCBI tax id: 312168
- Matching level: species
strain history
| @ref | history |
|---|---|
| 6918 | <- E. V. Pikuta, National Space Sciences and Technology Center/NASA, Huntsville, USA; SCA |
| 67770 | E. V. Pikuta strain SCA. |
doi: 10.13145/bacdive18065.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Anaerovirgula
- species: Anaerovirgula multivorans
- full scientific name: Anaerovirgula multivorans Pikuta et al. 2006
@ref: 6918
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Anaerovirgula
species: Anaerovirgula multivorans
full scientific name: Anaerovirgula multivorans Pikuta et al. 2006
strain designation: SCA
type strain: yes
Culture and growth conditions
culture medium
- @ref: 6918
- name: ANAEROBACILLUS MEDIUM (DSMZ Medium 898a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/898a
- composition: Name: ANAEROBACILLUS MEDIUM (DSMZ Medium 898a) Composition: NaCl 14.9701 g/l NaHCO3 9.98004 g/l D-Glucose 4.99002 g/l Na2CO3 2.75449 g/l NH4Cl 0.998004 g/l Yeast extract 0.499002 g/l Na2S x 9 H2O 0.499002 g/l KCl 0.199601 g/l KH2PO4 0.199601 g/l MgCl2 x 6 H2O 0.0998004 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l CoCl2 x 6 H2O 0.000189621 g/l Pyridoxine hydrochloride 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l ZnCl2 6.98603e-05 g/l Thiamine HCl 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6918 | positive | growth | 35 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 6918
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 6918 | anoxic alkaline lake sediments | California, Owens Lake | USA | USA | North America |
| 67770 | Mud sediments of Owens Lake, a soda lake | CA | USA | USA | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Environmental | #Aquatic | #Sediment |
| #Condition | #Alkaline | |
| #Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_19739.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_191;96_654;97_757;98_14907;99_19739&stattab=map
- Last taxonomy: Anaerovirgula multivorans subclade
- 16S sequence: AB201750
- Sequence Identity:
- Total samples: 26
- soil counts: 7
- aquatic counts: 6
- animal counts: 7
- plant counts: 6
Safety information
risk assessment
- @ref: 6918
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6918
- description: Anaerovirgula multivorans gene for 16S rRNA, partial sequence
- accession: AB201750
- length: 1495
- database: ena
- NCBI tax ID: 312168
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Anaerovirgula multivorans SCA | GCA_900188145 | scaffold | ncbi | 312168 |
| 66792 | Anaerovirgula multivorans SCA | 2706794911 | draft | img | 312168 |
GC content
- @ref: 67770
- GC-content: 34.2
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 86.426 | no |
| flagellated | yes | 66.147 | no |
| gram-positive | yes | 53.726 | no |
| anaerobic | yes | 96.882 | no |
| aerobic | no | 97.24 | yes |
| halophile | no | 86.051 | no |
| spore-forming | yes | 93.99 | no |
| thermophile | no | 90.111 | no |
| glucose-util | yes | 89.391 | no |
| glucose-ferment | yes | 50.813 | no |
External links
@ref: 6918
culture collection no.: DSM 17722, ATCC BAA 1084, JCM 12857
straininfo link
- @ref: 87053
- straininfo: 310944
literature
- topic: Phylogeny
- Pubmed-ID: 17082402
- title: Anaerovirgula multivorans gen. nov., sp. nov., a novel spore-forming, alkaliphilic anaerobe isolated from Owens Lake, California, USA.
- authors: Pikuta EV, Itoh T, Krader P, Tang J, Whitman WB, Hoover RB
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64198-0
- year: 2006
- mesh: Amino Acids/metabolism, Anaerobiosis, Anti-Bacterial Agents/pharmacology, Bacterial Typing Techniques, Base Composition, California, Carbohydrate Metabolism, Carboxylic Acids/metabolism, Catalase/analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis/chemistry, Genes, rRNA, Geologic Sediments/*microbiology, Gram-Positive Endospore-Forming Rods/*classification/cytology/*isolation & purification/physiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Movement, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Sodium Chloride/metabolism, Temperature, Water Microbiology
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6918 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17722) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17722 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 87053 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID310944.1 | StrainInfo: A central database for resolving microbial strain identifiers |