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Strain identifier

BacDive ID: 1799

Type strain: No

Species: Rhodoblastus acidophilus

Strain Designation: 2751

Strain history: <- N. Pfennig, 2751

NCBI tax ID(s): 1074 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2117

BacDive-ID: 1799

DSM-Number: 142

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Rhodoblastus acidophilus 2751 is an anaerobe, mesophilic bacterium that was isolated from forest pond.

NCBI tax id

  • NCBI tax id: 1074
  • Matching level: species

strain history: <- N. Pfennig, 2751

doi: 10.13145/bacdive1799.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Roseiarcaceae
  • genus: Rhodoblastus
  • species: Rhodoblastus acidophilus
  • full scientific name: Rhodoblastus acidophilus (Pfennig 1969) Imhoff 2001
  • synonyms

    • @ref: 20215
    • synonym: Rhodopseudomonas acidophila

@ref: 2117

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Roseiarcaceae

genus: Rhodoblastus

species: Rhodoblastus acidophilus

full scientific name: Rhodoblastus acidophilus (Pfennig 1969) Imhoff 2001

strain designation: 2751

type strain: no

Culture and growth conditions

culture medium

  • @ref: 2117
  • name: ACID RHODOSPIRILLACEAE MEDIUM (DSMZ Medium 26)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/26
  • composition: Name: ACID RHODOSPIRILLACEAE MEDIUM (DSMZ Medium 26) Composition: Disodium succinate 1.0 g/l Ammonium acetate 0.5 g/l KH2PO4 0.5 g/l MgSO4 x 7 H2O 0.4 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l L-Cysteine HCl 0.3 g/l Yeast extract 0.2 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water

culture temp

  • @ref: 2117
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 2117
  • oxygen tolerance: anaerobe

compound production

  • @ref: 2117
  • compound: hydrogen

Isolation, sampling and environmental information

isolation

  • @ref: 2117
  • sample type: forest pond

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Pond (small)
#Environmental#Terrestrial#Forest

taxonmaps

  • @ref: 69479
  • File name: preview.99_80840.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_18472;97_22831;98_56244;99_80840&stattab=map
  • Last taxonomy: Rhodoblastus acidophilus subclade
  • 16S sequence: JN408836
  • Sequence Identity:
  • Total samples: 1867
  • soil counts: 758
  • aquatic counts: 693
  • animal counts: 211
  • plant counts: 205

Safety information

risk assessment

  • @ref: 2117
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 2117
  • description: Rhodoblastus acidophilus strain DSM142 16S ribosomal RNA gene, partial sequence
  • accession: JN408836
  • length: 1453
  • database: ena
  • NCBI tax ID: 1074

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Rhodoblastus acidophilus DSM 142GCA_009720655contigncbi1074
66792Rhodoblastus acidophilus strain DSM 1421074.21wgspatric1074
66792Rhodoblastus acidophilus DSM 1422929245759draftimg1074
66792Rhodoblastus acidophilus 2751GCA_025961435contigncbi1074
66792Streptococcus pneumoniae SMRU1939GCA_001094605scaffoldpatric1313

GC content

  • @ref: 2117
  • GC-content: 62.8

External links

@ref: 2117

culture collection no.: DSM 142, Pfennig 2751

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/156422

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2117Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 142)https://www.dsmz.de/collection/catalogue/details/culture/DSM-142
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta