Strain identifier
BacDive ID: 1799
Type strain: 
Species: Rhodoblastus acidophilus
Strain Designation: 2751
Strain history: <- N. Pfennig, 2751
NCBI tax ID(s): 1074 (species)
version 9.1 (current version)
General
@ref: 2117
BacDive-ID: 1799
DSM-Number: 142
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative
description: Rhodoblastus acidophilus 2751 is an anaerobe, Gram-negative bacterium that was isolated from forest pond.
NCBI tax id
- NCBI tax id: 1074
- Matching level: species
strain history
- @ref: 2117
- history: <- N. Pfennig, 2751
doi: 10.13145/bacdive1799.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Roseiarcaceae
- genus: Rhodoblastus
- species: Rhodoblastus acidophilus
- full scientific name: Rhodoblastus acidophilus (Pfennig 1969) Imhoff 2001
synonyms
- @ref: 20215
- synonym: Rhodopseudomonas acidophila
@ref: 2117
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Roseiarcaceae
genus: Rhodoblastus
species: Rhodoblastus acidophilus
full scientific name: Rhodoblastus acidophilus (Pfennig 1969) Imhoff 2001
strain designation: 2751
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 96.315
Culture and growth conditions
culture medium
- @ref: 2117
- name: ACID RHODOSPIRILLACEAE MEDIUM (DSMZ Medium 26)
- growth: yes
- link: https://mediadive.dsmz.de/medium/26
- composition: Name: ACID RHODOSPIRILLACEAE MEDIUM (DSMZ Medium 26) Composition: Disodium succinate 1.0 g/l Ammonium acetate 0.5 g/l KH2PO4 0.5 g/l MgSO4 x 7 H2O 0.4 g/l NaCl 0.4 g/l NH4Cl 0.4 g/l L-Cysteine HCl 0.3 g/l Yeast extract 0.2 g/l CaCl2 x 2 H2O 0.05 g/l Fe(III) citrate 0.005 g/l Resazurin 0.005 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l MnCl2 x 4 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Vitamin B12 Distilled water
culture temp
- @ref: 2117
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
oxygen tolerance
- @ref: 2117
- oxygen tolerance: anaerobe
compound production
- @ref: 2117
- compound: hydrogen
Isolation, sampling and environmental information
isolation
- @ref: 2117
- sample type: forest pond
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Pond (small) |
| #Environmental | #Terrestrial | #Forest |
taxonmaps
- @ref: 69479
- File name: preview.99_80840.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_86;96_18472;97_22831;98_56244;99_80840&stattab=map
- Last taxonomy: Rhodoblastus acidophilus subclade
- 16S sequence: JN408836
- Sequence Identity:
- Total samples: 1867
- soil counts: 758
- aquatic counts: 693
- animal counts: 211
- plant counts: 205
Safety information
risk assessment
- @ref: 2117
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 2117
- description: Rhodoblastus acidophilus strain DSM142 16S ribosomal RNA gene, partial sequence
- accession: JN408836
- length: 1453
- database: nuccore
- NCBI tax ID: 1074
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Rhodoblastus acidophilus DSM 142 | GCA_009720655 | contig | ncbi | 1074 |
| 66792 | Rhodoblastus acidophilus strain DSM 142 | 1074.21 | wgs | patric | 1074 |
| 66792 | Rhodoblastus acidophilus DSM 142 | 2929245759 | draft | img | 1074 |
| 66792 | Rhodoblastus acidophilus 2751 | GCA_025961435 | contig | ncbi | 1074 |
GC content
- @ref: 2117
- GC-content: 62.8
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 96.315 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 57.019 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 86.913 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 50.611 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 97.961 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 71.441 | no |
External links
@ref: 2117
culture collection no.: DSM 142, Pfennig 2751
straininfo link
- @ref: 71446
- straininfo: 47067
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 2117 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 142) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-142 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 71446 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47067.1 | StrainInfo: A central database for resolving microbial strain identifiers |