Strain identifier

BacDive ID: 17974

Type strain: No

Species: Anaerococcus octavius

Strain Designation: SBH 405

Strain history: CIP <- 1997, DSMZ <- D.A. Murdoch: strain SBH 405

NCBI tax ID(s): 54007 (species)

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General

@ref: 3784

BacDive-ID: 17974

DSM-Number: 10024

keywords: Bacteria, anaerobe, mesophilic, Gram-positive, coccus-shaped, human pathogen

description: Anaerococcus octavius SBH 405 is an anaerobe, mesophilic, Gram-positive human pathogen that was isolated from antral washout; nasal polyps with maxillary sinuitis.

NCBI tax id

  • NCBI tax id: 54007
  • Matching level: species

strain history

@refhistory
3784<- D.A. Murdoch, SBH 405
121386CIP <- 1997, DSMZ <- D.A. Murdoch: strain SBH 405

doi: 10.13145/bacdive17974.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptoniphilaceae
  • genus: Anaerococcus
  • species: Anaerococcus octavius
  • full scientific name: Anaerococcus octavius (Murdoch et al. 1997) Ezaki et al. 2001

  • synonyms

    • @ref: 20215
    • synonym: Peptostreptococcus octavius

@ref: 3784

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptoniphilaceae

genus: Anaerococcus

species: Anaerococcus octavius

full scientific name: Anaerococcus octavius (Murdoch et al. 1997) Ezaki et al. 2001

strain designation: SBH 405

type strain: no

Morphology

cell morphology

  • @ref: 121386
  • gram stain: positive
  • cell shape: coccus-shaped
  • motility: no

colony morphology

  • @ref: 121386

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3784COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
3784PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
35811MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
121386CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperaturerange
3784positivegrowth37mesophilic
35811positivegrowth37mesophilic
54289positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
3784anaerobe
54289anaerobe

murein

  • @ref: 3784
  • murein short key: A12.03
  • type: A4alpha' L-Lys-Gly-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12138617632nitrate-reduction
12138616301nitrite-reduction
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

antibiotic resistance

  • @ref: 121386
  • ChEBI: 6909
  • metabolite: metronidazole
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
12138635581indoleno
6838035581indoleno

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5
121386oxidase-
121386catalase-1.11.1.6
121386urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
3784-+--------+-------+---+/-------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
3784antral washout; nasal polyps with maxillary sinuitisUnited KingdomGBREurope
54289Human antral washout,nasal polyps with sinuitis
121386Human, Antral washout

isolation source categories

Cat1Cat2
#Infection#Inflammation
#Host Body-Site#Oral cavity and airways

Safety information

risk assessment

@refpathogenicity humanbiosafety levelbiosafety level comment
3784yes, in single cases1Risk group (German classification)
1213861Risk group (French classification)

External links

@ref: 3784

culture collection no.: DSM 10024, CIP 105327, CCUG 38493

straininfo link

  • @ref: 86961
  • straininfo: 48737

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3784Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10024)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10024
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
35811Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17335
54289Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 38493)https://www.ccug.se/strain?id=38493
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68380Automatically annotated from API rID32A
86961Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48737.1StrainInfo: A central database for resolving microbial strain identifiers
121386Curators of the CIPCollection of Institut Pasteur (CIP 105327)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105327