Strain identifier

BacDive ID: 17973

Type strain: No

Species: Anaerococcus vaginalis

Strain Designation: ph9

Strain history: <- P. Hugon, Timone Hospital, Marseille, France; ph9 <- P. Hugon, URMITE, CNRS, Marseille, France

NCBI tax ID(s): 33037 (species)

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General

@ref: 18039

BacDive-ID: 17973

DSM-Number: 25446

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-positive

description: Anaerococcus vaginalis ph9 is an anaerobe, Gram-positive bacterium that was isolated from human feces.

NCBI tax id

  • NCBI tax id: 33037
  • Matching level: species

strain history

  • @ref: 18039
  • history: <- P. Hugon, Timone Hospital, Marseille, France; ph9 <- P. Hugon, URMITE, CNRS, Marseille, France

doi: 10.13145/bacdive17973.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Peptoniphilaceae
  • genus: Anaerococcus
  • species: Anaerococcus vaginalis
  • full scientific name: Anaerococcus vaginalis (Li et al. 1992) Ezaki et al. 2001

  • synonyms

    • @ref: 20215
    • synonym: Peptostreptococcus vaginalis

@ref: 18039

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Peptoniphilaceae

genus: Anaerococcus

species: Anaerococcus vaginalis

full scientific name: Anaerococcus vaginalis (Li et al. 1992) Ezaki et al. 2001

strain designation: ph9

type strain: no

Culture and growth conditions

culture medium

  • @ref: 18039
  • name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104
  • composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 18039
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 18039
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
18039-+--------+-----++---+---+/-+--

Isolation, sampling and environmental information

isolation

  • @ref: 18039
  • sample type: human feces
  • geographic location: Marseille
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

Safety information

risk assessment

  • @ref: 18039
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18039
  • description: Anaerococcus vaginalis strain PH9 16S ribosomal RNA gene, partial sequence
  • accession: JN837489
  • length: 1401
  • database: nuccore
  • NCBI tax ID: 33037

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Anaerococcus vaginalis PH9GCA_000307225scaffoldncbi33037
66792Anaerococcus obesiensis strain FDAARGOS_9891287640.3completepatric1287640
66792Anaerococcus vaginalis PH92547132149draftimg33037

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesyes60no
69480gram-positivegram-positivePositive reaction to Gram-stainingyes79.985no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes86.176yes
69480spore-formingspore-formingAbility to form endo- or exosporesno71.674no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no98.127yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno94.659yes
69480flagellatedmotile2+Ability to perform flagellated movementno85.012no

External links

@ref: 18039

culture collection no.: DSM 25446

straininfo link

  • @ref: 86960
  • straininfo: 397274

Reference

@idauthorscataloguedoi/urltitle
18039Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25446)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25446
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86960Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397274.1StrainInfo: A central database for resolving microbial strain identifiers