Strain identifier
BacDive ID: 17963
Type strain: 
Species: Anaerobranca gottschalkii
Strain Designation: LBS3
Strain history: <- S. G. Prowe and G. Antranikian, Techn. Univ. Hamburg-Harburg, Germany; LBS3 <- S. G. Prowe and G. Antranikian {1994}
NCBI tax ID(s): 1120990 (strain), 108328 (species)
version 8.1 (current version)
General
@ref: 5093
BacDive-ID: 17963
DSM-Number: 13577
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, thermophilic, motile
description: Anaerobranca gottschalkii LBS3 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from hot water inlet.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1120990 | strain |
| 108328 | species |
strain history
- @ref: 5093
- history: <- S. G. Prowe and G. Antranikian, Techn. Univ. Hamburg-Harburg, Germany; LBS3 <- S. G. Prowe and G. Antranikian {1994}
doi: 10.13145/bacdive17963.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Syntrophomonadaceae
- genus: Anaerobranca
- species: Anaerobranca gottschalkii
- full scientific name: Anaerobranca gottschalkii Prowe and Antranikian 2001
@ref: 5093
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Proteinivoraceae
genus: Anaerobranca
species: Anaerobranca gottschalkii
full scientific name: Anaerobranca gottschalkii Prowe and Antranikian 2001
strain designation: LBS3
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 91.853 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 5093
- name: ANAEROBRANCA GOTTSCHALKII MEDIUM (DSMZ Medium 895)
- growth: yes
- link: https://mediadive.dsmz.de/medium/895
- composition: Name: ANAEROBRANCA GOTTSCHALKII MEDIUM (DSMZ Medium 895) Composition: Na2CO3 2.9615 g/l Starch 1.97433 g/l (NH4)2SO4 0.987167 g/l K2HPO4 0.493583 g/l L-Cysteine HCl x H2O 0.493583 g/l NH4Cl 0.394867 g/l Tryptone 0.246792 g/l Yeast extract 0.246792 g/l Na2S2O3 x 5 H2O 0.0987167 g/l MgSO4 x 7 H2O 0.029615 g/l Nitrilotriacetic acid 0.0148075 g/l NaCl 0.00987167 g/l MnSO4 x H2O 0.00493583 g/l CoSO4 x 7 H2O 0.0017769 g/l ZnSO4 x 7 H2O 0.0017769 g/l CaCl2 x 2 H2O 0.000987167 g/l FeSO4 x 7 H2O 0.000987167 g/l Sodium resazurin 0.000493583 g/l NiCl2 x 6 H2O 0.00029615 g/l AlK(SO4)2 x 12 H2O 0.000197433 g/l CuSO4 x 5 H2O 9.87167e-05 g/l H3BO3 9.87167e-05 g/l Pyridoxine hydrochloride 9.87167e-05 g/l Na2MoO4 x 2 H2O 9.87167e-05 g/l p-Aminobenzoic acid 4.93583e-05 g/l (DL)-alpha-Lipoic acid 4.93583e-05 g/l Calcium D-(+)-pantothenate 4.93583e-05 g/l Nicotinic acid 4.93583e-05 g/l Riboflavin 4.93583e-05 g/l Thiamine HCl 4.93583e-05 g/l Folic acid 1.97433e-05 g/l Biotin 1.97433e-05 g/l Na2WO4 x 2 H2O 3.94867e-06 g/l Na2SeO3 x 5 H2O 2.9615e-06 g/l Vitamin B12 9.87167e-07 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range | confidence |
|---|---|---|---|---|---|
| 5093 | positive | growth | 50 | thermophilic | |
| 69480 | thermophilic | 96.461 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 5093 | anaerobe | |
| 69480 | anaerobe | 99.719 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 98.099 |
Isolation, sampling and environmental information
isolation
- @ref: 5093
- sample type: hot water inlet
- geographic location: Lake Bogoria
- country: Kenya
- origin.country: KEN
- continent: Africa
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Engineered | #Built environment |
| #Environmental | #Aquatic |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 5093
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 5093
- description: Anaerobranca bogoriae 16S ribosomal RNA gene, complete sequence
- accession: AF203703
- length: 1433
- database: ena
- NCBI tax ID: 108328
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Anaerobranca gottschalkii DSM 13577 | GCA_900111575 | scaffold | ncbi | 1120990 |
| 66792 | Anaerobranca gottschalkii DSM 13577 | 1120990.3 | wgs | patric | 1120990 |
| 66792 | Anaerobranca gottschalkii DSM 13577 | 2602042032 | draft | img | 1120990 |
GC content
- @ref: 5093
- GC-content: 30.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 80.383 | no |
| flagellated | no | 82.696 | no |
| gram-positive | yes | 61.511 | no |
| anaerobic | yes | 98.447 | no |
| aerobic | no | 98.282 | yes |
| halophile | no | 60.979 | no |
| spore-forming | yes | 77.321 | no |
| glucose-ferment | no | 51.474 | no |
| thermophile | yes | 99.554 | yes |
| glucose-util | yes | 90.92 | no |
External links
@ref: 5093
culture collection no.: DSM 13577
straininfo link
- @ref: 86950
- straininfo: 49491
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 11321091 | Anaerobranca gottschalkii sp. nov., a novel thermoalkaliphilic bacterium that grows anaerobically at high pH and temperature. | Prowe SG, Antranikian G | Int J Syst Evol Microbiol | 10.1099/00207713-51-2-457 | 2001 | Alkalies, Bacteria, Anaerobic/*classification/growth & development, Base Composition, Cell Wall/ultrastructure, Gram-Positive Bacteria/*classification/drug effects/growth & development/ultrastructure, Hot Temperature, Microbial Sensitivity Tests, Molecular Sequence Data, Oxidation-Reduction, Sodium Chloride/pharmacology, *Soil Microbiology, Sulfates/metabolism, Terminology as Topic | Stress |
| Phylogeny | 23807772 | Proteinivorax tanatarense gen. nov., sp. nov., an anaerobic, haloalkaliphilic, proteolytic bacterium isolated from a decaying algal bloom, and proposal of Proteinivoraceae fam. nov. | Kevbrin V, Boltyanskaya Y, Zhilina T, Kolganova T, Lavrentjeva E, Kuznetsov B | Extremophiles | 10.1007/s00792-013-0557-1 | 2013 | Bacteria, Anaerobic/classification/genetics/*isolation & purification/metabolism, Cellobiose/metabolism, DNA, Bacterial/chemistry, *Eutrophication, Fermentation, Fumarates/metabolism, Glycerol/metabolism, Gram-Positive Bacteria/classification/genetics/*isolation & purification/metabolism, Lakes/microbiology, Phylogeny, Pyruvic Acid/metabolism, RNA, Ribosomal, 16S/genetics, Ribonucleosides/metabolism, Salt Tolerance, Sulfur/metabolism | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 5093 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13577) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13577 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 86950 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49491.1 | StrainInfo: A central database for resolving microbial strain identifiers |