Strain identifier
BacDive ID: 17952
Type strain: 
Species: Thiomonas islandica
Strain Designation: 6C
Strain history: J. Örlygsson 6C.
NCBI tax ID(s): 545537 (species)
version 8.1 (current version)
General
@ref: 15704
BacDive-ID: 17952
DSM-Number: 21436
keywords: 16S sequence, Bacteria, microaerophile, thermophilic, Gram-negative, motile, rod-shaped
description: Thiomonas islandica 6C is a microaerophile, thermophilic, Gram-negative bacterium that was isolated from clayish liquid sample of a hot spring.
NCBI tax id
- NCBI tax id: 545537
- Matching level: species
strain history
| @ref | history |
|---|---|
| 15704 | <- J. Örlygsson, Univ. Akureyri, Iceland; 6C <- J. Örlygsson {2007} |
| 67770 | J. Örlygsson 6C. |
doi: 10.13145/bacdive17952.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Thiomonas
- species: Thiomonas islandica
- full scientific name: Thiomonas islandica Vésteinsdóttir et al. 2011
@ref: 15704
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Thiomonas
species: Thiomonas islandica
full scientific name: Thiomonas islandica Vésteinsdóttir et al. 2011
strain designation: 6C
type strain: yes
Morphology
cell morphology
- @ref: 29543
- gram stain: negative
- cell length: 1.7 µm
- cell width: 0.4 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 29543
- production: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 15704 | R2A MEDIUM (MICROAEROBIC) (DSMZ Medium 830d) | yes | https://mediadive.dsmz.de/medium/830d | Name: R2A MEDIUM (MICROAEROBIC) (DSMZ Medium 830d) Composition: Starch 0.5 g/l Glucose 0.5 g/l Casamino acids 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l Na-pyruvate 0.3 g/l K2HPO4 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 15704 | THIOMONAS ISLANDICA MEDIUM (DSMZ Medium 81a) | yes | https://mediadive.dsmz.de/medium/81a | Name: THIOMONAS ISLANDICA MEDIUM (DSMZ Medium 81a) Composition: Na2HPO4 x 2 H2O 2.86845 g/l K2HPO4 2.27498 g/l NH4Cl 0.98912 g/l NaHCO3 0.49456 g/l MgSO4 x 7 H2O 0.49456 g/l Ferric ammonium citrate 0.049456 g/l CaCl2 x 2 H2O 0.0098912 g/l NaVO3 x H2O 0.0049456 g/l H3BO3 0.00148368 g/l CoCl2 x 6 H2O 0.00098912 g/l ZnSO4 x 7 H2O 0.00049456 g/l Pyridoxine hydrochloride 0.000296736 g/l Thiamine-HCl x 2 H2O 0.000197824 g/l Nicotinic acid 0.000197824 g/l MnCl2 x 4 H2O 0.000148368 g/l Na2MoO4 x 2 H2O 0.000148368 g/l Vitamin B12 9.8912e-05 g/l Calcium pantothenate 9.8912e-05 g/l NiCl2 x 6 H2O 9.8912e-05 g/l p-Aminobenzoic acid 7.91296e-05 g/l CuCl2 x 2 H2O 4.9456e-05 g/l D-(+)-biotin 1.97824e-05 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 15704 | positive | growth | 45 | thermophilic |
| 29543 | positive | optimum | 45 | thermophilic |
| 67770 | positive | growth | 45 | thermophilic |
culture pH
- @ref: 29543
- ability: positive
- type: optimum
- pH: 4
- PH range: acidophile
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 15704 | microaerophile |
| 29543 | aerobe |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29543 | 30089 | acetate | + | carbon source |
| 29543 | 29987 | glutamate | + | carbon source |
| 29543 | 15361 | pyruvate | + | carbon source |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 15704 | clayish liquid sample of a hot spring | Hveragerði - Graendalur | Iceland | ISL | Europe |
| 67770 | Hot spring in Graendalur | Iceland | ISL | Europe |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_31772.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_1616;97_1933;98_23589;99_31772&stattab=map
- Last taxonomy: Thiomonas islandica subclade
- 16S sequence: EU625663
- Sequence Identity:
- Total samples: 12
- soil counts: 2
- aquatic counts: 9
- animal counts: 1
Safety information
risk assessment
- @ref: 15704
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 15704
- description: Thiomonas islandica strain 6C 16S ribosomal RNA gene, partial sequence
- accession: EU625663
- length: 1492
- database: ena
- NCBI tax ID: 545537
GC content
| @ref | GC-content | method |
|---|---|---|
| 15704 | 65.2 | high performance liquid chromatography (HPLC) |
| 29543 | 65.2 |
External links
@ref: 15704
culture collection no.: DSM 21436, JCM 16107
straininfo link
- @ref: 86939
- straininfo: 400589
literature
- topic: Phylogeny
- Pubmed-ID: 20173005
- title: Thiomonas islandica sp. nov., a moderately thermophilic, hydrogen- and sulfur-oxidizing betaproteobacterium isolated from a hot spring.
- authors: Vesteinsdottir H, Reynisdottir DB, Orlygsson J
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.015511-0
- year: 2010
- mesh: Aerobiosis, Base Composition, Betaproteobacteria/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Hot Springs/*microbiology, Hydrogen/*metabolism, Hydrogen-Ion Concentration, Iceland, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Organic Chemicals/metabolism, Oxidation-Reduction, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sulfur/*metabolism, Temperature, Thiosulfates/metabolism
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 15704 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21436) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21436 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29543 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25939 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 86939 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID400589.1 | StrainInfo: A central database for resolving microbial strain identifiers |