Strain identifier

BacDive ID: 17930

Type strain: Yes

Species: Sphaerotilus mobilis

Strain Designation: FeOx-1

Strain history: <- S. Spring, Univ. München, Feox-1

NCBI tax ID(s): 47994 (species)

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General

@ref: 3987

BacDive-ID: 17930

DSM-Number: 10617

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Sphaerotilus mobilis FeOx-1 is a mesophilic, Gram-negative bacterium that was isolated from freshwater sediment.

NCBI tax id

  • NCBI tax id: 47994
  • Matching level: species

strain history

  • @ref: 3987
  • history: <- S. Spring, Univ. München, Feox-1

doi: 10.13145/bacdive17930.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Sphaerotilus
  • species: Sphaerotilus mobilis
  • full scientific name: Sphaerotilus mobilis (Spring et al. 1997) Liu et al. 2023

  • synonyms

    • @ref: 20215
    • synonym: Leptothrix mobilis

@ref: 3987

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Leptothrix

species: Leptothrix mobilis

full scientific name: Leptothrix mobilis Spring et al. 1997

strain designation: FeOx-1

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.998

Culture and growth conditions

culture medium

  • @ref: 3987
  • name: SPHAEROTILUS-LEPTOTHRIX MEDIUM (DSMZ Medium 803)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/803
  • composition: Name: SPHAEROTILUS-LEPTOTHRIX MEDIUM (DSMZ Medium 803) Composition: Agar 20.0 g/l Peptone 1.5 g/l Yeast extract 1.0 g/l Ferric ammonium citrate 0.5 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l CaCl2 0.05 g/l FeCl3 x 6 H2O 0.01 g/l Tap water

culture temp

  • @ref: 3987
  • growth: positive
  • type: growth
  • temperature: 25
  • range: mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.988

Isolation, sampling and environmental information

isolation

  • @ref: 3987
  • sample type: freshwater sediment
  • geographic location: Bavaria, Chiemsee
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Aquatic#Freshwater

taxonmaps

  • @ref: 69479
  • File name: preview.99_30371.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1;96_1718;97_2769;98_22598;99_30371&stattab=map
  • Last taxonomy: Leptothrix mobilis subclade
  • 16S sequence: X97071
  • Sequence Identity:
  • Total samples: 221
  • soil counts: 30
  • aquatic counts: 136
  • animal counts: 41
  • plant counts: 14

Safety information

risk assessment

  • @ref: 3987
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: L.mobilis 16S rRNA gene
  • accession: X97071
  • length: 1521
  • database: ena
  • NCBI tax ID: 47994

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Leptothrix mobilis DSM 10617GCA_004216565scaffoldncbi47994
66792Leptothrix mobilis strain DSM 1061747994.5wgspatric47994
66792Leptothrix mobilis DSM 106172802428809draftimg47994

GC content

  • @ref: 3987
  • GC-content: 68

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno78no
motileyes83.002no
flagellatedyes79.11no
gram-positiveno98.972no
anaerobicno97.881no
aerobicyes78.095no
halophileno94.688no
spore-formingno94.002no
glucose-utilyes70.882no
thermophileno93.827yes
glucose-fermentno89.529no

External links

@ref: 3987

culture collection no.: DSM 10617

straininfo link

  • @ref: 86919
  • straininfo: 14432

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3987Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10617)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10617
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
86919Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID14432.1StrainInfo: A central database for resolving microbial strain identifiers