Strain identifier

BacDive ID: 17924

Type strain: Yes

Species: Aquabacterium parvum

Strain Designation: B6

Culture col. no.: DSM 11968, CCM 4958, CCUG 48317, CIP 106983, ATCC BAA 208

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4560

BacDive-ID: 17924

DSM-Number: 11968

keywords: Bacteria, 16S sequence, genome sequence, aerobe, mesophilic

description: Aquabacterium parvum B6 is an aerobe, mesophilic bacterium that was isolated from biofilm in drinking water pipe.

strain history: <- S. Kalmbach; B6

doi: 10.13145/bacdive17924.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Aquabacterium
  • species: Aquabacterium parvum
  • full scientific name: Aquabacterium parvum Kalmbach et al. 1999

@ref: 4560

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiales, not assigned to family

genus: Aquabacterium

species: Aquabacterium parvum

full scientific name: Aquabacterium parvum Kalmbach et al. 1999

strain designation: B6

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4560MEDIUM R2A MODIFIED (DSMZ Medium 830a)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium830a.pdf
40552MEDIUM 372 - for AquabacteriumyesDistilled water make up to (1000.000 ml);Magnesium sulphate heptahydrate (0.050 g);Agar (15.000 g);Glucose (0.500 g);Yeast extract (0.500 g);Pyruvic acid (0.300g);Tween 80 (1.000 ml);Casamino acids (0.500 g);Proteose Peptone N°3 (0.500 g);Di Potassium mon

culture temp

@refgrowthtypetemperaturerange
4560positivegrowth28mesophilic
40552positivegrowth25mesophilic
58080positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 58080
  • oxygen tolerance: aerobe

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
4560biofilm in drinking water pipeBerlinGermanyDEUEurope
58080Drinking water biofilmsGermanyDEUEurope1996

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Biofilm

Safety information

risk assessment

  • @ref: 4560
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 4560
  • description: Beta proteobacterium B6 16S ribosomal RNA gene, partial sequence
  • accession: AF035052
  • length: 1416
  • database: ena
  • NCBI tax ID: 70584

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aquabacterium parvum B6GCA_001447195contigncbi70584
66792Aquabacterium parvum strain B670584.11wgspatric70584

External links

@ref: 4560

culture collection no.: DSM 11968, CCM 4958, CCUG 48317, CIP 106983, ATCC BAA 208

straininfo link

@refpassport
20218http://www.straininfo.net/strains/162951
20218http://www.straininfo.net/strains/162952

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4560Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11968)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11968
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40552Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/19173
58080Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 48317)https://www.ccug.se/strain?id=48317
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)