Strain identifier

BacDive ID: 17922

Type strain: Yes

Species: Zhongshania guokunii

Strain Designation: ZS6-22

Strain history: <- S.-W. Kwon, KACC <- Y.-Z. Zhang, State Key Lab. Microbial Technology, Marine Biotechnology Research Center, PRChina

NCBI tax ID(s): 641783 (species)

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General

@ref: 18113

BacDive-ID: 17922

DSM-Number: 25804

keywords: 16S sequence, Bacteria, mesophilic

description: Zhongshania guokunii ZS6-22 is a mesophilic bacterium that was isolated from coastal surface water and fast ice.

NCBI tax id

  • NCBI tax id: 641783
  • Matching level: species

strain history

  • @ref: 18113
  • history: <- S.-W. Kwon, KACC <- Y.-Z. Zhang, State Key Lab. Microbial Technology, Marine Biotechnology Research Center, PRChina

doi: 10.13145/bacdive17922.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Cellvibrionales
  • family: Spongiibacteraceae
  • genus: Zhongshania
  • species: Zhongshania guokunii
  • full scientific name: Zhongshania guokunii Li et al. 2011

@ref: 18113

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Spongiibacteraceae

genus: Zhongshania

species: Zhongshania guokunii

full scientific name: Zhongshania guokunii Li et al. 2011

strain designation: ZS6-22

type strain: yes

Morphology

colony morphology

  • @ref: 18113
  • incubation period: 3-7 days

multimedia

  • @ref: 18113
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25804.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 18113
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 18113
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 18113
  • sample type: coastal surface water and fast ice
  • geographic location: near Zhongshan Station
  • country: Antarctica
  • origin.country: ATA
  • continent: Australia and Oceania
  • latitude: -69.37
  • longitude: 76.3722

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Ice
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Surface water

taxonmaps

  • @ref: 69479
  • File name: preview.99_3871.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_305;96_1986;97_2387;98_2948;99_3871&stattab=map
  • Last taxonomy: Zhongshania
  • 16S sequence: FJ889678
  • Sequence Identity:
  • Total samples: 4397
  • soil counts: 107
  • aquatic counts: 3986
  • animal counts: 283
  • plant counts: 21

Safety information

risk assessment

  • @ref: 18113
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18113
  • description: Zhongshania guokunii strain ZS6-22 16S ribosomal RNA gene, partial sequence
  • accession: FJ889678
  • length: 1501
  • database: ena
  • NCBI tax ID: 641783

GC content

  • @ref: 18113
  • GC-content: 51.8

External links

@ref: 18113

culture collection no.: DSM 25804, CCTCC AB 209247, KACC 14532

straininfo link

  • @ref: 86911
  • straininfo: 401001

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20851909Zhongshania antarctica gen. nov., sp. nov. and Zhongshania guokunii sp. nov., gammaproteobacteria respectively isolated from coastal attached (fast) ice and surface seawater of the Antarctic.Li HJ, Zhang XY, Chen CX, Zhang YJ, Gao ZM, Yu Y, Chen XL, Chen B, Zhang YZInt J Syst Evol Microbiol10.1099/ijs.0.026153-02010Aerobiosis, Antarctic Regions, Bacterial Typing Techniques, Base Composition, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, *Ice, Molecular Sequence Data, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, TemperatureMetabolism
Phylogeny25122615Zhongshania aliphaticivorans sp. nov., an aliphatic hydrocarbon-degrading bacterium isolated from marine sediment, and transfer of Spongiibacter borealis Jang et al. 2011 to the genus Zhongshania as Zhongshania borealis comb. nov.Lo N, Kang HJ, Jeon COInt J Syst Evol Microbiol10.1099/ijs.0.068593-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Hydrocarbons/metabolism, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryGenetics
Phylogeny30570482Zhongshania marina sp. nov., isolated from deep-sea water.On YG, Oh JS, Roh DHInt J Syst Evol Microbiol10.1099/ijsem.0.0031952018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome
Phylogeny35982281Zhongshania aquimaris sp. nov., isolated from seawater.Weerawongwiwat V, Kim JH, Lee JS, Yoon JH, Sukhoom A, Kim WArch Microbiol10.1007/s00203-022-03184-22022Bacterial Typing Techniques, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, *Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, *Seawater/microbiology, Sequence Analysis, DNATranscriptome

Reference

@idauthorscataloguedoi/urltitle
18113Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25804)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25804
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86911Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID401001.1StrainInfo: A central database for resolving microbial strain identifiers