Strain identifier
BacDive ID: 17909
Type strain: 
Species: Spongiispira norvegica
Strain Designation: GP-MBA-4/7.1., Gp_4_7.1
Strain history: <- R. Szewzyk <- I. Kaesler, TU Berlin, Environmental Microbiol., Germany; Gp_4_7.1
NCBI tax ID(s): 354245 (strain), 1123225 (species)
version 8.1 (current version)
General
@ref: 7167
BacDive-ID: 17909
DSM-Number: 17749
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Spongiispira norvegica GP-MBA-4/7.1. is an aerobe, mesophilic, Gram-negative bacterium that was isolated from boreal sponge Isops phlegraei.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1123225 | species |
| 354245 | strain |
strain history
- @ref: 7167
- history: <- R. Szewzyk <- I. Kaesler, TU Berlin, Environmental Microbiol., Germany; Gp_4_7.1
doi: 10.13145/bacdive17909.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Oceanospirillales
- family: Oceanospirillales, not assigned to family
- genus: Spongiispira
- species: Spongiispira norvegica
- full scientific name: Spongiispira norvegica Kaesler et al. 2008
@ref: 7167
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Gammaproteobacteria, not assigned to family
genus: Spongiispira
species: Spongiispira norvegica
full scientific name: Spongiispira norvegica Kaesler et al. 2008
strain designation: GP-MBA-4/7.1., Gp_4_7.1
type strain: yes
Morphology
cell morphology
- @ref: 32403
- gram stain: negative
- cell length: 02-05 µm
- cell width: 0.3-0.4 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 32403
- production: yes
Culture and growth conditions
culture medium
- @ref: 7167
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7167 | positive | growth | 28 | mesophilic |
| 32403 | positive | growth | 06-37 | |
| 32403 | positive | optimum | 20-30 |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 32403 | positive | growth | 6.5-8.5 | alkaliphile |
| 32403 | positive | optimum | 07-08 |
Physiology and metabolism
oxygen tolerance
- @ref: 32403
- oxygen tolerance: aerobe
spore formation
- @ref: 32403
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 32403 | NaCl | positive | growth | 02-07 % |
| 32403 | NaCl | positive | optimum | 02-03 % |
observation
- @ref: 32403
- observation: aggregates in chains
metabolite utilization
- @ref: 32403
- Chebi-ID: 22599
- metabolite: arabinose
- utilization activity: +
- kind of utilization tested: carbon source
enzymes
- @ref: 32403
- value: cytochrome oxidase
- activity: +
- ec: 1.9.3.1
Isolation, sampling and environmental information
isolation
- @ref: 7167
- sample type: boreal sponge Isops phlegraei
- host species: Isops phlegraei
- geographic location: Sula Ridge near the coast of mid-Norway
- country: Norway
- origin.country: NOR
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Porifera (Sponges)
taxonmaps
- @ref: 69479
- File name: preview.99_61982.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_306;96_6009;97_34133;98_43966;99_61982&stattab=map
- Last taxonomy: Spongiispira
- 16S sequence: AM117931
- Sequence Identity:
- Total samples: 2207
- soil counts: 31
- aquatic counts: 1951
- animal counts: 190
- plant counts: 35
Safety information
risk assessment
- @ref: 7167
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7167
- description: Spongiispira norvegica partial 16S rRNA gene, isolate Gp_4_7.1
- accession: AM117931
- length: 1486
- database: ena
- NCBI tax ID: 354245
GC content
- @ref: 7167
- GC-content: 62.6
External links
@ref: 7167
culture collection no.: DSM 17749, NCIMB 14401
straininfo link
- @ref: 86898
- straininfo: 404694
literature
- topic: Phylogeny
- Pubmed-ID: 18676462
- title: Spongiispira norvegica gen. nov., sp. nov., a marine bacterium isolated from the boreal sponge Isops phlegraei.
- authors: Kaesler I, Graeber I, Borchert MS, Pape T, Dieckmann R, von Dohren H, Nielsen P, Lurz R, Michaelis W, Szewzyk U
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65439-0
- year: 2008
- mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/isolation & purification/physiology, Genes, rRNA, Marine Biology, Molecular Sequence Data, Norway, Phenotype, Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 7167 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17749) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17749 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 32403 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28627 | 28776041 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 86898 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID404694.1 | StrainInfo: A central database for resolving microbial strain identifiers |