Strain identifier
BacDive ID: 17893
Type strain: 
Species: Alkalimonas amylolytica
Strain Designation: N10
Strain history: <- Y. Ma and Y. Xue; N10
NCBI tax ID(s): 152573 (species)
version 8.1 (current version)
General
@ref: 7512
BacDive-ID: 17893
DSM-Number: 18337
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Alkalimonas amylolytica N10 is a mesophilic, motile bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 152573
- Matching level: species
strain history
- @ref: 7512
- history: <- Y. Ma and Y. Xue; N10
doi: 10.13145/bacdive17893.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Gammaproteobacteria, not assigned to order
- family: Gammaproteobacteria, not assigned to family
- genus: Alkalimonas
- species: Alkalimonas amylolytica
- full scientific name: Alkalimonas amylolytica Ma et al. 2007
@ref: 7512
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Gammaproteobacteria, not assigned to family
genus: Alkalimonas
species: Alkalimonas amylolytica
full scientific name: Alkalimonas amylolytica Ma et al. 2007
strain designation: N10
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.219 | |
| 69480 | 99.964 | negative |
Culture and growth conditions
culture medium
- @ref: 7512
- name: BOGORIELLA MEDIUM (DSMZ Medium 785)
- growth: yes
- link: https://mediadive.dsmz.de/medium/785
- composition: Name: BOGORIELLA MEDIUM (DSMZ Medium 785; with strain-specific modifications) Composition: NaCl 30.0 g/l Glucose 10.0 g/l Na2CO3 10.0 g/l Yeast extract 5.0 g/l Peptone 5.0 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 0.2 g/l Distilled water
culture temp
- @ref: 7512
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.952 |
Isolation, sampling and environmental information
isolation
- @ref: 7512
- sample type: soil
- geographic location: Mongolia, Lake Chahannor (39°14' N 108° 04' E)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 39.2333
- longitude: 108.067
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_118337.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_43;96_10856;97_42765;98_79842;99_118337&stattab=map
- Last taxonomy: Alkalimonas amylolytica subclade
- 16S sequence: AF250323
- Sequence Identity:
- Total samples: 374
- soil counts: 23
- aquatic counts: 163
- animal counts: 179
- plant counts: 9
Safety information
risk assessment
- @ref: 7512
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7512
- description: Gamma proteobacterium N10 16S ribosomal RNA gene, partial sequence
- accession: AF250323
- length: 1510
- database: ena
- NCBI tax ID: 152573
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Alkalimonas amylolytica CGMCC 1.3430 | GCA_900107845 | scaffold | ncbi | 152573 |
| 66792 | Alkalimonas amylolytica strain CGMCC 1.3430 | 152573.10 | wgs | patric | 152573 |
| 66792 | Alkalimonas amylolytica CGMCC 1.3430 | 2617270770 | draft | img | 152573 |
GC content
- @ref: 7512
- GC-content: 52.5
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| glucose-ferment | no | 74.051 | no |
| motile | yes | 91.5 | no |
| flagellated | yes | 83.339 | no |
| gram-positive | no | 99.062 | no |
| anaerobic | no | 95.325 | no |
| aerobic | yes | 83.451 | no |
| halophile | no | 81.175 | no |
| spore-forming | no | 92.827 | no |
| thermophile | no | 98.842 | yes |
| glucose-util | yes | 90.771 | no |
External links
@ref: 7512
culture collection no.: DSM 18337, AS 1.3430, CGMCC 1.3430
straininfo link
- @ref: 86882
- straininfo: 297121
literature
- topic: Phylogeny
- Pubmed-ID: 14986177
- title: Alkalimonas amylolytica gen. nov., sp. nov., and Alkalimonas delamerensis gen. nov., sp. nov., novel alkaliphilic bacteria from soda lakes in China and East Africa.
- authors: Ma Y, Xue Y, Grant WD, Collins NC, Duckworth AW, Van Steenbergen RP, Jones BE
- journal: Extremophiles
- DOI: 10.1007/s00792-004-0377-4
- year: 2004
- mesh: Africa, Eastern, Base Composition, China, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Fresh Water/microbiology, Gammaproteobacteria/*classification/genetics/*metabolism/ultrastructure, Genotype, Hydrogen-Ion Concentration, Microscopy, Electron, Phenotype, Phylogeny, Sodium Chloride, Species Specificity
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 7512 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18337) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18337 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 86882 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297121.1 | StrainInfo: A central database for resolving microbial strain identifiers |