Strain identifier
BacDive ID: 17875
Type strain: 
Species: Rhizomicrobium palustre
Strain Designation: RR54
Strain history: A. Ueki RR25.
NCBI tax ID(s): 189966 (species)
General
@ref: 8360
BacDive-ID: 17875
DSM-Number: 19865
keywords: 16S sequence, Bacteria, mesophilic
description: Rhizomicrobium palustre RR54 is a mesophilic bacterium that was isolated from roots of rice plants from irrigated rice field soil.
NCBI tax id
- NCBI tax id: 189966
- Matching level: species
strain history
| @ref | history |
|---|---|
| 8360 | <- A. Ueki, Yamagata Univ., Tsuruoka, Japan; RR54 <- A. Ueki et al. |
| 67770 | A. Ueki RR25. |
doi: 10.13145/bacdive17875.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Micropepsales
- family: Micropepsaceae
- genus: Rhizomicrobium
- species: Rhizomicrobium palustre
- full scientific name: Rhizomicrobium palustre Ueki et al. 2010
@ref: 8360
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Micropepsaceae
genus: Rhizomicrobium
species: Rhizomicrobium palustre
full scientific name: Rhizomicrobium palustre Ueki et al. 2010
strain designation: RR54
type strain: no
Culture and growth conditions
culture medium
- @ref: 8360
- name: RHIZOMICROBIUM MEDIUM (DSMZ Medium 1288)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1288
- composition: Name: RHIZOMICROBIUM MEDIUM (DSMZ Medium 1288) Composition: Trypticase 10.0 g/l Yeast extract 5.0 g/l NaCl 0.9 g/l (NH4)2SO4 0.9 g/l KH2PO4 0.45 g/l K2HPO4 0.45 g/l L-Cysteine HCl 0.3 g/l Starch 0.25 g/l Maltose 0.25 g/l Cellobiose 0.25 g/l Glucose 0.25 g/l Na2CO3 0.2 g/l CaCl2 x 2 H2O 0.09 g/l MgSO4 x 7 H2O 0.09 g/l Resazurin 0.001 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 8360 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 8360 | roots of rice plants (Oryza sativa cv. Haenuki, type japonica) from irrigated rice field soil | Oryza sativa | Yamagata, Tsuruoka, Shonai Branch of the Yamagata Agricultural Research Center | Japan | JPN | Asia |
| 67770 | Roots of living rice plants (Oryza sativa cv. Haenuki, type japonica) | Oryza sativa | Tsuruoka, Yamagata | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Agriculture | #Field |
| #Environmental | #Terrestrial | #Soil |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Safety information
risk assessment
- @ref: 8360
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 8360
- description: Rhizomicrobium palustre gene for 16S ribosomal RNA, partial sequence, strain: RR54
- accession: AB174822
- length: 1406
- database: ena
- NCBI tax ID: 189966
GC content
- @ref: 8360
- GC-content: 53.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 8360
culture collection no.: DSM 19865, JCM 14973
straininfo link
- @ref: 86864
- straininfo: 397461
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 8360 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19865) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19865 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 86864 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397461.1 | StrainInfo: A central database for resolving microbial strain identifiers |