Strain identifier

BacDive ID: 17863

Type strain: Yes

Species: Leptotrichia trevisanii

Strain Designation: "Wee Tee" 1999

Strain history: <- M. L. Dyall-Smith; "Wee Tee" 1999 {2008} <- ATCC <- M. Dyall-Smith <- W. Tee

NCBI tax ID(s): 1122173 (strain), 109328 (species)

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General

@ref: 16054

BacDive-ID: 17863

DSM-Number: 22070

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, human pathogen

description: Leptotrichia trevisanii "Wee Tee" 1999 is an anaerobe, mesophilic human pathogen that was isolated from blood of 46-year-old man with acute myeloid leukemia.

NCBI tax id

NCBI tax idMatching level
1122173strain
109328species

strain history

  • @ref: 16054
  • history: <- M. L. Dyall-Smith; "Wee Tee" 1999 {2008} <- ATCC <- M. Dyall-Smith <- W. Tee

doi: 10.13145/bacdive17863.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteriota
  • domain: Bacteria
  • phylum: Fusobacteriota
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Leptotrichiaceae
  • genus: Leptotrichia
  • species: Leptotrichia trevisanii
  • full scientific name: Leptotrichia trevisanii Tee et al. 2002

@ref: 16054

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Leptotrichiaceae

genus: Leptotrichia

species: Leptotrichia trevisanii

full scientific name: Leptotrichia trevisanii Tee et al. 2002

strain designation: "Wee Tee" 1999

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16054COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
16054CHOPPED MEAT MEDIUM (DSMZ Medium 78)yeshttps://mediadive.dsmz.de/medium/78Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water

culture temp

  • @ref: 16054
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 16054
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
16054-----++--+++----+------------

Isolation, sampling and environmental information

isolation

  • @ref: 16054
  • sample type: blood of 46-year-old man with acute myeloid leukemia
  • country: Australia
  • origin.country: AUS
  • continent: Australia and Oceania

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human#Male
#Host Body Product#Fluids#Blood

taxonmaps

  • @ref: 69479
  • File name: preview.99_31381.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_108;96_5360;97_6474;98_23331;99_31381&stattab=map
  • Last taxonomy: Leptotrichia trevisanii subclade
  • 16S sequence: AF206305
  • Sequence Identity:
  • Total samples: 21158
  • soil counts: 211
  • aquatic counts: 331
  • animal counts: 20529
  • plant counts: 87

Safety information

risk assessment

  • @ref: 16054
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16054
  • description: Leptotrichia sp. 'Wee Tee 1999' 16S ribosomal RNA gene, partial sequence
  • accession: AF206305
  • length: 1461
  • database: ena
  • NCBI tax ID: 109328

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Leptotrichia trevisanii DSM 22070GCA_000482505scaffoldncbi1122173
66792Leptotrichia trevisanii DSM 220701122173.3wgspatric1122173
66792Leptotrichia trevisanii DSM 220702528311094draftimg1122173

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno94.967no
flagellatedno97.398no
gram-positiveno93.012no
anaerobicyes97.155yes
aerobicno99.109yes
halophileno72.591no
spore-formingno95.558no
thermophileno98.074no
glucose-utilyes74.953no
glucose-fermentyes66.181no

External links

@ref: 16054

culture collection no.: DSM 22070, ATCC 700907

straininfo link

  • @ref: 86853
  • straininfo: 100732

Reference

@idauthorscataloguedoi/urltitle
16054Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22070)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22070
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86853Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID100732.1StrainInfo: A central database for resolving microbial strain identifiers