Strain identifier

BacDive ID: 17861

Type strain: No

Species: Leptotrichia amnionii

Strain Designation: T1490/99

Strain history: <- S. J. De Martino <- B. Jaulhac; T1490/99

NCBI tax ID(s): 187101 (species)

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General

@ref: 6534

BacDive-ID: 17861

DSM-Number: 16630

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative

description: Leptotrichia amnionii T1490/99 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human blood, case 2.

NCBI tax id

  • NCBI tax id: 187101
  • Matching level: species

strain history

  • @ref: 6534
  • history: <- S. J. De Martino <- B. Jaulhac; T1490/99

doi: 10.13145/bacdive17861.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteriota
  • domain: Bacteria
  • phylum: Fusobacteriota
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Leptotrichiaceae
  • genus: Leptotrichia
  • species: Leptotrichia amnionii
  • full scientific name: Leptotrichia amnionii Shukla et al. 2002

@ref: 6534

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Leptotrichiaceae

genus: Leptotrichia

species: Leptotrichia amnionii

full scientific name: Leptotrichia amnionii Shukla et al. 2002

strain designation: T1490/99

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.807

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6534CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)yeshttps://mediadive.dsmz.de/medium/110Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
6534FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)yeshttps://mediadive.dsmz.de/medium/1203Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water

culture temp

  • @ref: 6534
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
6534anaerobe
69480anaerobe98.463

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.999

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase+3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
6534-----+--+-------++---+-------

Isolation, sampling and environmental information

isolation

  • @ref: 6534
  • sample type: human blood, case 2
  • geographic location: Strasbourg
  • country: France
  • origin.country: FRA
  • continent: Europe
  • latitude: 48.5839
  • longitude: 7.7455

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

Sequence information

16S sequences

  • @ref: 6534
  • description: Leptotrichia amnionii strain T1490/99 16S ribosomal RNA gene, partial sequence
  • accession: AY688941
  • length: 319
  • database: ena
  • NCBI tax ID: 187101

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sneathia sp. DSM 16630 T1490/99GCA_014892255scaffoldncbi2777993
66792Sneathia sp. DSM 16630 strain T1490/992777993.3wgspatric2777993

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes74no
motileno94.212no
flagellatedno98.532no
gram-positiveno61.235no
anaerobicyes66.956no
aerobicno98.309no
halophileyes68.997no
spore-formingno97.093no
glucose-utilyes82.23no
thermophileno86.457no
glucose-fermentyes75.531no

External links

@ref: 6534

culture collection no.: DSM 16630

literature

  • topic: Phylogeny
  • Pubmed-ID: 33616512
  • title: Sneathia vaginalis sp. nov. (Fusobacteriales, Leptotrichiaceae) as a replacement of the species 'Sneathia amnii' Harwich et al. 2012 and 'Leptotrichia amnionii' Shukla et al. 2002, and emended description of Sneathia Collins et al. 2001.
  • authors: Eisenberg T, Gronow S, Falgenhauer J, Imirzalioglu C, Muhldorfer K, Rau J, Blom J, Fawzy A, Glaeser SP, Kampfer P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.004663
  • year: 2021

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6534Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16630)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16630
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)