Strain identifier

BacDive ID: 17812

Type strain: No

Species: Marinilabilia salmonicolor

Strain history: CIP <- 1996, IFO <- ATCC <- H. Veldkamp

NCBI tax ID(s): 989 (species)

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General

@ref: 720

BacDive-ID: 17812

DSM-Number: 2097

keywords: 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Marinilabilia salmonicolor DSM 2097 is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from marine mud.

NCBI tax id

  • NCBI tax id: 989
  • Matching level: species

strain history

@refhistory
720<- H. Reichenbach, Cy s2 (Cytophaga agarovorans) <- ATCC <- H. Veldkamp (C. salmonicolor var. agarovorans)
67770IAM 14297 <-- NCIMB 2217 <-- ATCC 19043 <-- H. Veldkamp ("Cytophaga salmonicolor subsp. agarovorans") <-- J. Lascelles.
122400CIP <- 1996, IFO <- ATCC <- H. Veldkamp

doi: 10.13145/bacdive17812.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Bacteroidia
  • order: Bacteroidales
  • family: Marinilabiliaceae
  • genus: Marinilabilia
  • species: Marinilabilia salmonicolor
  • full scientific name: Marinilabilia salmonicolor (Veldkamp 1961) Nakagawa and Yamasato 1996

  • synonyms

    @refsynonym
    20215Cytophaga salmonicolor
    20215Marinilabilia agarovorans
    20215Cytophaga agarovorans

@ref: 720

domain: Bacteria

phylum: Bacteroidetes

class: Bacteroidia

order: Bacteroidales

family: Marinilabiliaceae

genus: Marinilabilia

species: Marinilabilia salmonicolor

full scientific name: Marinilabilia salmonicolor (Veldkamp 1961) Nakagawa and Yamasato 1996 emend. Suzuki et al. 1999

type strain: no

Morphology

cell morphology

  • @ref: 122400
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
720CY S2 MEDIUM (DSMZ Medium 172a)yeshttps://mediadive.dsmz.de/medium/172aName: CY S2 MEDIUM (DSMZ Medium 172a) Composition: NaCl 30.0 g/l Glucose 1.0 g/l Agar 1.0 g/l Yeast extract 1.0 g/l NH4Cl 1.0 g/l KH2PO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaHCO3 0.5 g/l Na2S x 9 H2O 0.099 g/l CaCl2 x 2 H2O 0.06 g/l FeCl3 x 6 H2O 0.00125 g/l Distilled water
38519Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
122400CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13
122400CIP Medium 186yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=186

culture temp

@refgrowthtypetemperaturerange
720positivegrowth30mesophilic
38519positivegrowth25mesophilic
67770positivegrowth30mesophilic
122400positivegrowth15-37
122400nogrowth5psychrophilic
122400nogrowth41thermophilic

Physiology and metabolism

halophily

@refsaltgrowthtested relationconcentration
122400NaClpositivegrowth8 %
122400NaClnogrowth0 %
122400NaClnogrowth2 %
122400NaClnogrowth4 %
122400NaClnogrowth6 %
122400NaClnogrowth10 %

observation

  • @ref: 67770
  • observation: quinones: MK-7

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose+builds acid from16634
68371inulin+builds acid from15443
68371sucrose+builds acid from17992
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose-builds acid from16988
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
122400nitrate-reduction17632
122400nitrite-reduction16301
122400glucose+/-degradation17234

metabolite production

  • @ref: 122400
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
122400oxidase-
122400beta-galactosidase+3.2.1.23
122400gelatinase-
122400catalase+1.11.1.6
122400gamma-glutamyltransferase-2.3.2.2
122400phenylalanine ammonia-lyase-4.3.1.24
122400tryptophan deaminase-
122400urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase+3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122400-+-------+++++++++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122400---+/------+/-+++--------+/-+/-+++/-++++/-++/-++/-+++-++---------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122400-----------------++------+---------------+---------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample type
720marine mud
67770Marine mud
122400Environment, Marine mud

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Mud (Sludge)
#Environmental#Aquatic#Sediment

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
7201Risk group (German classification)
1224001Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Marinilabilia salmonicolor small subunit ribosomal RNA gene, partial sequenceM624221475ena989
67770Marinilabilia salmonicolor biovar Agarovorans gene for 16S ribosomal RNA, partial sequence, strain: NCIMB 2217D126541258ena60555

GC content

  • @ref: 67770
  • GC-content: 41
  • method: Buoyant density centrifugation (BD)

External links

@ref: 720

culture collection no.: DSM 2097, ATCC 19043, IAM 14297, NCIMB 2217, Cy s2, JCM 21137, CIP 104810, LMG 13037, LMG 8387, LMG 8607, NBRC 14957, IFO 14957

straininfo link

  • @ref: 86804
  • straininfo: 2153

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
720Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2097)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2097
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38519Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16760
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
86804Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID2153.1StrainInfo: A central database for resolving microbial strain identifiers
122400Curators of the CIPCollection of Institut Pasteur (CIP 104810)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104810