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Strain identifier

BacDive ID: 17765

Type strain: Yes

Species: Hydrotalea sandarakina

Strain Designation: AF-51

Strain history: <- M. da Costa, Univ. Coimbra, Portugal; AF-51 <- L. Albuquerque

NCBI tax ID(s): 1004304 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16706

BacDive-ID: 17765

DSM-Number: 23241

keywords: genome sequence, 16S sequence, Bacteria, aerobe, thermophilic, rod-shaped

description: Hydrotalea sandarakina AF-51 is an aerobe, thermophilic, rod-shaped bacterium that was isolated from water of a hot spring.

NCBI tax id

  • NCBI tax id: 1004304
  • Matching level: species

strain history: <- M. da Costa, Univ. Coimbra, Portugal; AF-51 <- L. Albuquerque

doi: 10.13145/bacdive17765.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Chitinophagia
  • order: Chitinophagales
  • family: Chitinophagaceae
  • genus: Hydrotalea
  • species: Hydrotalea sandarakina
  • full scientific name: Hydrotalea sandarakina Albuquerque et al. 2012

@ref: 16706

domain: Bacteria

phylum: Bacteroidetes

class: Chitinophagia

order: Sphingobacteriales

family: Chitinophagaceae

genus: Hydrotalea

species: Hydrotalea sandarakina

full scientific name: Hydrotalea sandarakina Albuquerque et al. 2012

strain designation: AF-51

type strain: yes

Morphology

cell morphology

@refcell lengthcell widthcell shapemotilitygram stainconfidence
303672.25 µm0.4 µmrod-shapedno
69480negative99.382

pigmentation

  • @ref: 30367
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 16706
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16706positivegrowth45thermophilic
30367positivegrowth25-52.5
30367positiveoptimum45thermophilic

culture pH

@refabilitytypepH
30367positivegrowth6-6.5
30367positiveoptimum6.25

Physiology and metabolism

oxygen tolerance

  • @ref: 30367
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30367no
69480no96.741

halophily

@refsaltgrowthtested relationconcentrationhalophily levelconfidence
30367NaClpositivegrowth<1 %
69480non-halophilic93.7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3036735391aspartate+carbon source
3036717057cellobiose+carbon source
3036728757fructose+carbon source
3036728260galactose+carbon source
3036724265gluconate+carbon source
3036717234glucose+carbon source
3036729987glutamate+carbon source
3036717754glycerol+carbon source
3036724996lactate+carbon source
3036717716lactose+carbon source
3036717306maltose+carbon source
3036737684mannose+carbon source
3036718257ornithine+carbon source
3036726271proline+carbon source
3036716634raffinose+carbon source
3036717992sucrose+carbon source
3036727082trehalose+carbon source
3036718222xylose+carbon source

enzymes

@refvalueactivityec
30367acid phosphatase+3.1.3.2
30367alkaline phosphatase+3.1.3.1
30367alpha-galactosidase+3.2.1.22
30367catalase+1.11.1.6
30367cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 16706
  • sample type: water of a hot spring
  • geographic location: Azores Islands, Island of São Miguel, Furnas area, Área da Fonte 1825
  • country: Portugal
  • origin.country: PRT
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_94878.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_185;96_38903;97_49548;98_65145;99_94878&stattab=map
  • Last taxonomy: Hydrotalea sandarakina subclade
  • 16S sequence: JF739858
  • Sequence Identity:
  • Total samples: 2396
  • soil counts: 187
  • aquatic counts: 1119
  • animal counts: 1052
  • plant counts: 38

Safety information

risk assessment

  • @ref: 16706
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16706
  • description: Hydrotalea sandarakina strain AF-51 16S ribosomal RNA gene, partial sequence
  • accession: JF739858
  • length: 1531
  • database: ena
  • NCBI tax ID: 1004304

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Hydrotalea sandarakina DSM 23241GCA_003254115scaffoldncbi1004304
66792Hydrotalea sandarakina strain DSM 232411004304.4wgspatric1004304
66792Hydrotalea sandarakina DSM 232412593339290draftimg1004304
66792Acinetobacter baumannii Ab4653GCA_002762155completepatric470

GC content

@refGC-contentmethod
1670635.2high performance liquid chromatography (HPLC)
3036735.2

External links

@ref: 16706

culture collection no.: DSM 23241, LMG 25526

straininfo link

@refpassport
20218http://www.straininfo.net/strains/872031
20218http://www.straininfo.net/strains/850190

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21890728Hydrotalea sandarakina sp. nov., isolated from a hot spring runoff, and emended descriptions of the genus Hydrotalea and the species Hydrotalea flava.Albuquerque L, Rainey FA, Nobre MF, da Costa MSInt J Syst Evol Microbiol10.1099/ijs.0.034496-02011Aerobiosis, Azores, Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/*isolation & purification/physiology, Catalase/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Hot Springs/*microbiology, Molecular Sequence Data, Oxidoreductases/metabolism, Phylogeny, Pigments, Biological/metabolism, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, TemperatureMetabolism
Phylogeny23796643Characteristics of an orange-pigmented bacterium isolated from a hot spring in Kagoshima, Japan.Furuhata K, Ishizaki N, Handa Y, Nishijima M, Fukuyama MBiocontrol Sci10.4265/bio.18.1052013Bacteria/classification/genetics/*isolation & purification/metabolism, Base Composition, Fatty Acids/metabolism, Hot Springs/*microbiology, Japan, Molecular Sequence Data, Phylogeny, Pigments, Biological/*metabolismMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
16706Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23241)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23241
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2670710.1099/ijs.0.034496-021890728
30367Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126707
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)