Strain identifier

BacDive ID: 17739

Type strain: Yes

Species: Balneola alkaliphila

Strain Designation: CM41_14b

Strain history: CIP <- 2007, L. Urios, CNRS, Banyuls sur mer, France: strain CM41_14b

NCBI tax ID(s): 455359 (species)

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General

@ref: 8159

BacDive-ID: 17739

DSM-Number: 19538

keywords: 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped

description: Balneola alkaliphila CM41_14b is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from water column in the bay of Banyuls-sur-Mer.

NCBI tax id

  • NCBI tax id: 455359
  • Matching level: species

strain history

@refhistory
8159<- P. Lebaron, Lab. d'Océanographie Biologique de Banyuls (LOBB), Univ. Pierre et Marie Curie; CM41_14b <- L. Intertaglia
377832007, L. Urios, CNRS, Banyuls/mer, France: strain CM41_14b
116241CIP <- 2007, L. Urios, CNRS, Banyuls sur mer, France: strain CM41_14b

doi: 10.13145/bacdive17739.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/balneolota
  • domain: Bacteria
  • phylum: Balneolota
  • class: Balneolia
  • order: Balneolales
  • family: Balneolaceae
  • genus: Balneola
  • species: Balneola alkaliphila
  • full scientific name: Balneola alkaliphila Urios et al. 2008

@ref: 8159

domain: Bacteria

phylum: Balneolaeota

class: Balneolia

order: Sphingobacteriales

family: Balneolaceae

genus: Balneola

species: Balneola alkaliphila

full scientific name: Balneola alkaliphila Urios et al. 2008

strain designation: CM41_14b

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
32479negative2.6 µm0.7 µmrod-shapedno
116241negativerod-shapedno

pigmentation

  • @ref: 32479
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8159BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37783Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
116241CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperature
8159positivegrowth25
32479positivegrowth15-37
32479positiveoptimum25
37783positivegrowth30

culture pH

@refabilitytypepHPH range
32479positivegrowth06-10alkaliphile
32479positiveoptimum8.5

Physiology and metabolism

oxygen tolerance

  • @ref: 32479
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3247930089acetate+carbon source
3247916947citrate+carbon source
3247928757fructose+carbon source
3247917596inosine+carbon source
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose-builds acid from
6837128066gentiobiose-builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837127082trehalose-builds acid from
6837117992sucrose-builds acid from
6837128053melibiose-builds acid from
6837117716lactose-builds acid from
6837117306maltose-builds acid from
6837117057cellobiose-builds acid from
6837117814salicin-builds acid from
683714853esculin-builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose-builds acid from
6837117634D-glucose-builds acid from
6837112936D-galactose-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from
11624117632nitrate-reduction
11624116301nitrite-reduction

metabolite production

  • @ref: 116241
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
32479alkaline phosphatase+3.1.3.1
116241oxidase+
116241catalase+1.11.1.6
116241urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116241-+---++++-----------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
116241---------------------+/-----------+/----------------+/-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
8159water column in the bay of Banyuls-sur-Mernorth-western Mediterranean SeaFranceFRAEurope
116241Environment, Sea waterBanyuls sur merFranceFRAEurope2004

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_7046.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_471;96_3305;97_4052;98_5177;99_7046&stattab=map
  • Last taxonomy: Balneola alkaliphila subclade
  • 16S sequence: EU008564
  • Sequence Identity:
  • Total samples: 804
  • soil counts: 25
  • aquatic counts: 759
  • animal counts: 17
  • plant counts: 3

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
81591Risk group (German classification)
1162411Risk group (French classification)

Sequence information

16S sequences

  • @ref: 8159
  • description: Balneola alkaliphila strain CM41_14b 16S ribosomal RNA gene, partial sequence
  • accession: EU008564
  • length: 1421
  • database: nuccore
  • NCBI tax ID: 455359

GC content

@refGC-content
815939.0
3247938.7

External links

@ref: 8159

culture collection no.: DSM 19538, CIP 109603, OOB 103

straininfo link

  • @ref: 86729
  • straininfo: 354298

literature

  • topic: Phylogeny
  • Pubmed-ID: 18523166
  • title: Balneola alkaliphila sp. nov., a marine bacterium isolated from the Mediterranean Sea.
  • authors: Urios L, Intertaglia L, Lesongeur F, Lebaron P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65555-0
  • year: 2008
  • mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification/physiology, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Mediterranean Sea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
8159Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19538)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19538
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32479Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2869928776041
37783Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7365
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86729Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID354298.1StrainInfo: A central database for resolving microbial strain identifiers
116241Curators of the CIPCollection of Institut Pasteur (CIP 109603)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109603