Strain identifier

BacDive ID: 17723

Type strain: Yes

Species: Saccharomonospora iraqiensis

Strain Designation: IQ-H1

Strain history: AS 4.1193 <-- A. M. Al-Tai IQ-H1.

NCBI tax ID(s): 52698 (species)

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General

@ref: 11949

BacDive-ID: 17723

DSM-Number: 44640

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Saccharomonospora iraqiensis IQ-H1 is a mesophilic bacterium that was isolated from saline soil.

NCBI tax id

  • NCBI tax id: 52698
  • Matching level: species

strain history

@refhistory
11949<- T. Kudo, JCM <- AS, China <- A. M. Al-Tai; IQ-H1
67770AS 4.1193 <-- A. M. Al-Tai IQ-H1.

doi: 10.13145/bacdive17723.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Saccharomonospora
  • species: Saccharomonospora iraqiensis
  • full scientific name: Saccharomonospora iraqiensis (Ruan et al. 1994) Nouioui et al. 2018

  • synonyms

    • @ref: 20215
    • synonym: Actinopolyspora iraqiensis

@ref: 11949

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Saccharomonospora

species: Saccharomonospora iraqiensis

full scientific name: Saccharomonospora iraqiensis (Ruan et al. 1994) Nouioui et al. 2018

strain designation: IQ-H1

type strain: yes

Morphology

multimedia

  • @ref: 11949
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_44640.jpg
  • caption: Medium 1159 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
11949MODIFIED CM+YE MEDIUM (B) (DSMZ Medium 910)yeshttps://mediadive.dsmz.de/medium/910Name: MODIFIED CM+YE MEDIUM (B) (DSMZ Medium 910) Composition: NaCl 100.0 g/l Agar 15.0 g/l MgSO4 x 7 H2O 10.0 g/l Yeast extract 10.0 g/l Casamino acids 7.5 g/l Trisodium citrate x 2 H2O 3.0 g/l KCl 2.0 g/l FeSO4 x 7 H2O 0.0498 g/l Distilled water
11949GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159)yeshttps://mediadive.dsmz.de/medium/1159Name: GYM STREPTOMYCES MEDIUM 10% NACL (DSMZ Medium 1159) Composition: NaCl 100.0 g/l Agar 15.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
11949positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
11949saline soilIraqIRQAsia
67770Saline soilIraqIRQAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_767.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_466;97_533;98_613;99_767&stattab=map
  • Last taxonomy: Saccharomonospora
  • 16S sequence: EF372523
  • Sequence Identity:
  • Total samples: 1665
  • soil counts: 719
  • aquatic counts: 120
  • animal counts: 716
  • plant counts: 110

Safety information

risk assessment

  • @ref: 11949
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinopolyspora iraqiensis strain A.S. 4.1193 16S ribosomal RNA gene, partial sequenceEF3725221516ena882080
20218A.iraqiensis (IQ-H1T) DNA for 16S-23S rRNA intergenic spacerZ46602329ena882080
11949Actinopolyspora iraqiensis strain DSM 44640 16S ribosomal RNA gene, partial sequenceEF3725231434ena882080

Genome sequences

  • @ref: 67770
  • description: Saccharomonospora iraqiensis IQ-H1
  • accession: GCA_000430445
  • assembly level: scaffold
  • database: ncbi
  • NCBI tax ID: 882080

GC content

  • @ref: 67770
  • GC-content: 71.5
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno89.701no
flagellatedno97.391no
gram-positiveyes85.989no
anaerobicno97.915no
aerobicyes90.389no
halophileyes67.4no
spore-formingyes55.186no
thermophileno82.901no
glucose-utilyes89.671no
glucose-fermentno93.117no

External links

@ref: 11949

culture collection no.: DSM 44640, AS 4.1193, JCM 9891, BCRC 16263, CGMCC 4.1193, NBRC 103187

straininfo link

  • @ref: 86714
  • straininfo: 66035

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11949Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44640)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44640
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86714Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID66035.1StrainInfo: A central database for resolving microbial strain identifiers