Strain identifier

BacDive ID: 17705

Type strain: Yes

Species: Algoriphagus chordae

Culture col. no.: CIP 108556, DSM 19830, CCUG 47095, KMM 3957, LMG 21970

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General

@ref: 8339

BacDive-ID: 17705

DSM-Number: 19830

keywords: mesophilic, aerobe, Bacteria, 16S sequence, genome sequence, gram-negative, rod-shaped

description: Algoriphagus chordae CIP 108556 is an aerobe, mesophilic, gram-negative bacterium that was isolated from brown alga Chorda filum.

strain history: <- O. I. Nedashkovskaya, Pacific Inst. Bioorg. Chem., RAS, Vladivostok; KMM 3957

doi: 10.13145/bacdive17705.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Cytophagia
  • order: Cytophagales
  • family: Cyclobacteriaceae
  • genus: Algoriphagus
  • species: Algoriphagus chordae
  • full scientific name: Algoriphagus chordae Nedashkovskaya et al. 2004

@ref: 8339

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Cyclobacteriaceae

genus: Algoriphagus

species: Algoriphagus chordae

full scientific name: Algoriphagus chordae Nedashkovskaya et al. 2004

type strain: yes

Morphology

cell morphology

  • @ref: 30078
  • gram stain: negative
  • cell length: 6 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30078
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8339BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514.pdf
40016Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)

culture temp

@refgrowthtypetemperaturerange
8339positivegrowth25mesophilic
30078positivegrowth04-32
30078positiveoptimum24psychrophilic
40016positivegrowth25mesophilic
57506positivegrowth25-28mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30078aerobe
57506aerobe

halophily

@refsaltgrowthtested relationconcentration
30078NaClpositivegrowth01-10 %
30078NaClpositiveoptimum5.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3007822599arabinose+carbon source
3007817057cellobiose+carbon source
3007833984fucose+carbon source
3007828260galactose+carbon source
3007817234glucose+carbon source
3007817716lactose+carbon source
3007817306maltose+carbon source
3007837684mannose+carbon source
3007828053melibiose+carbon source
3007816634raffinose+carbon source
3007826546rhamnose+carbon source
3007817992sucrose+carbon source
3007853424tween 20+carbon source
3007853423tween 40+carbon source
3007818222xylose+carbon source

enzymes

@refvalueactivityec
30078alkaline phosphatase+3.1.3.1
30078catalase+1.11.1.6
30078cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcontinentsampling datecountry
8339brown alga Chorda filumChorda filumSea of Japan, Gulf of Peter the Great, Troitsa BayAsia
57506Brown alga,Chorda filumSea of Japan2000-06-01Pacific Ocean

isolation source categories

  • Cat1: #Host
  • Cat2: #Algae
  • Cat3: #Brown Algae

Safety information

risk assessment

  • @ref: 8339
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8339
  • description: Rhodovirga chordae 16S rRNA gene, strain LMG 21970
  • accession: AJ575265
  • length: 1473
  • database: ena
  • NCBI tax ID: 237019

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Algoriphagus chordae DSM 19830GCA_003254055scaffoldncbi237019
66792Algoriphagus chordae strain DSM 19830237019.4wgspatric237019
66792Algoriphagus chordae DSM 198302593339285permanentimg237019

GC content

  • @ref: 30078
  • GC-content: 38.5

External links

@ref: 8339

culture collection no.: CIP 108556, DSM 19830, CCUG 47095, KMM 3957, LMG 21970

straininfo link

@refpassport
20218http://www.straininfo.net/strains/764064
20218http://www.straininfo.net/strains/381331
20218http://www.straininfo.net/strains/291004
20218http://www.straininfo.net/strains/371557

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
8339Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19830)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19830
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2643510.1099/ijs.0.02915-0
30078Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information26435
40016Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6191
57506Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 47095)https://www.ccug.se/strain?id=47095
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)