Strain identifier
BacDive ID: 17665
Type strain: 
Species: Granulosicoccus antarcticus
Strain history: <- NBRC <- K. Lee, Inha University, Incheon, Korea; IMCC3135
NCBI tax ID(s): 1192854 (strain), 437505 (species)
version 8.1 (current version)
General
@ref: 17798
BacDive-ID: 17665
DSM-Number: 24912
keywords: 16S sequence, Bacteria, psychrophilic
description: Granulosicoccus antarcticus DSM 24912 is a psychrophilic bacterium that was isolated from surface seawater.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1192854 | strain |
| 437505 | species |
strain history
- @ref: 17798
- history: <- NBRC <- K. Lee, Inha University, Incheon, Korea; IMCC3135
doi: 10.13145/bacdive17665.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Chromatiales
- family: Granulosicoccaceae
- genus: Granulosicoccus
- species: Granulosicoccus antarcticus
- full scientific name: Granulosicoccus antarcticus Lee et al. 2008
@ref: 17798
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Chromatiales
family: Granulosicoccaceae
genus: Granulosicoccus
species: Granulosicoccus antarcticus
full scientific name: Granulosicoccus antarcticus Lee et al. 2008
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 17798 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 17798 | MARINE MEDIUM WITH PYRUVATE (DSMZ Medium 1303) | yes | https://mediadive.dsmz.de/medium/1303 | Name: MARINE MEDIUM WITH PYRUVATE (DSMZ Medium 1303) Composition: NaCl 21.1 g/l Agar 16.0 g/l Na-pyruvate 5.0 g/l Marine Broth 3.7 g/l MgCl2 x 6 H2O 3.6 g/l MgSO4 x 7 H2O 2.62 g/l CaCl2 x 2 H2O 1.2 g/l KCl 0.58 g/l NaHCO3 0.0800003 g/l Distilled water |
culture temp
- @ref: 17798
- growth: positive
- type: growth
- temperature: 20
- range: psychrophilic
Isolation, sampling and environmental information
isolation
- @ref: 17798
- sample type: surface seawater
- geographic location: King George Island, coast of Weaver Peninsula (62°14'S, 58°47'E)
- continent: Australia and Oceania
- latitude: -62.2333
- longitude: -58.7833
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Surface water |
taxonmaps
- @ref: 69479
- File name: preview.99_46892.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1048;96_4730;97_5737;98_16602;99_46892&stattab=map
- Last taxonomy: Granulosicoccus antarcticus
- 16S sequence: AB681900
- Sequence Identity:
- Total samples: 210
- soil counts: 16
- aquatic counts: 177
- animal counts: 9
- plant counts: 8
Safety information
risk assessment
- @ref: 17798
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Granulosicoccus antarcticus gene for 16S rRNA, partial sequence, strain: NBRC 102684 | AB681900 | 1470 | ena | 1192854 |
| 17798 | Granulosicoccus antarcticus strain IMCC3135 16S ribosomal RNA gene, partial sequence | EF495228 | 1481 | ena | 1192854 |
GC content
- @ref: 17798
- GC-content: 58.0
External links
@ref: 17798
culture collection no.: DSM 24912, KCCM 42676, NBRC 102684, IMCC 3135
straininfo link
- @ref: 86656
- straininfo: 403744
literature
| topic | Pubmed-ID | title | authors | journal | year | mesh | topic2 | DOI |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 18062226 | Granulosicoccaceae fam. nov., to include Granulosicoccus antarcticus gen. nov., sp. nov., a non-phototrophic, obligately aerobic chemoheterotroph in the order Chromatiales, isolated from Antarctic seawater. | Lee K, Lee HK, Choi TH, Kim KM, Cho JC | J Microbiol Biotechnol | 2007 | Antarctic Regions, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Gammaproteobacteria/*classification/genetics/*metabolism, Genes, rRNA, Phylogeny, RNA, Ribosomal, 16S/*analysis/genetics, Seawater/*microbiology, Sodium Chloride/metabolism | Metabolism | |
| Phylogeny | 19661498 | Granulosicoccus coccoides sp. nov., isolated from leaves of seagrass (Zostera marina). | Kurilenko VV, Christen R, Zhukova NV, Kalinovskaya NI, Mikhailov VV, Crawford RJ, Ivanova EP | Int J Syst Evol Microbiol | 2009 | Bacterial Typing Techniques, Base Composition, DNA, Ribosomal/analysis/genetics, Fatty Acids/analysis, Gammaproteobacteria/*classification/genetics/*isolation & purification/physiology, Genes, rRNA, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Plant Leaves/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Zosteraceae/*microbiology | Genetics | 10.1099/ijs.0.013516-0 |
| Phylogeny | 25238763 | Granulosicoccus marinus sp. nov., isolated from Antarctic seawater, and emended description of the genus Granulosicoccus. | Baek K, Choi A, Kang I, Im M, Cho JC | Int J Syst Evol Microbiol | 2014 | Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics | 10.1099/ijs.0.070045-0 |
| Genetics | 29175002 | Complete genome sequence of Granulosicoccus antarcticus type strain IMCC3135(T), a marine gammaproteobacterium with a putative dimethylsulfoniopropionate demethylase gene. | Kang I, Lim Y, Cho JC | Mar Genomics | 2017 | Amino Acid Sequence, Bacterial Proteins/*genetics/metabolism, Gammaproteobacteria/*genetics, *Genome, Bacterial, Phylogeny, Sequence Alignment, Whole Genome Sequencing | Phylogeny | 10.1016/j.margen.2017.11.005 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 17798 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24912) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24912 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 86656 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID403744.1 | StrainInfo: A central database for resolving microbial strain identifiers |