Strain identifier

BacDive ID: 17662

Type strain: Yes

Species: Nevskia terrae

Strain Designation: KIS13-15

Strain history: S.-W. Kwon KIS13-15.

NCBI tax ID(s): 675609 (species)

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General

@ref: 18106

BacDive-ID: 17662

DSM-Number: 25747

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Nevskia terrae KIS13-15 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 675609
  • Matching level: species

strain history

@refhistory
18106<- S.-W. Kwon, KACC; KIS13-15
67770S.-W. Kwon KIS13-15.

doi: 10.13145/bacdive17662.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Nevskiales
  • family: Nevskiaceae
  • genus: Nevskia
  • species: Nevskia terrae
  • full scientific name: Nevskia terrae Kim et al. 2011

@ref: 18106

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Nevskiaceae

genus: Nevskia

species: Nevskia terrae

full scientific name: Nevskia terrae Kim et al. 2011

strain designation: KIS13-15

type strain: yes

Morphology

cell morphology

  • @ref: 29795
  • gram stain: negative
  • cell length: 1.75 µm
  • cell width: 0.5 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 18106
  • incubation period: 3-7 days

pigmentation

  • @ref: 29795
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 18106
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18106positivegrowth28mesophilic
29795positivegrowth15-35
29795positiveoptimum29mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepH
29795positivegrowth05-07
29795positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 29795
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
29795NaClpositivegrowth<1 %
29795NaClpositiveoptimum0.5 %

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2979530089acetate+carbon source
2979522599arabinose+carbon source
2979516947citrate+carbon source
2979533984fucose+carbon source
2979527570histidine+carbon source
2979524996lactate+carbon source
2979525115malate+carbon source
2979529864mannitol+carbon source
2979528053melibiose+carbon source
29795506227N-acetylglucosamine+carbon source
2979526271proline+carbon source
2979517272propionate+carbon source
2979526546rhamnose+carbon source
2979530911sorbitol+carbon source
2979553426tween 80+carbon source

enzymes

@refvalueactivityec
29795acid phosphatase+3.1.3.2
29795catalase+1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
18106soilWest Sea, Baengnyeongdo IslandRepublic of KoreaKORAsia37.9797124.714
67770Soil of Baekryoung IslandRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_67229.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_146;96_3049;97_3828;98_4862;99_67229&stattab=map
  • Last taxonomy: Nevskia terrae
  • 16S sequence: GQ845011
  • Sequence Identity:
  • Total samples: 2365
  • soil counts: 1407
  • aquatic counts: 268
  • animal counts: 442
  • plant counts: 248

Safety information

risk assessment

  • @ref: 18106
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18106
  • description: Nevskia terrae strain KIS13-15 16S ribosomal RNA gene, partial sequence
  • accession: GQ845011
  • length: 1461
  • database: ena
  • NCBI tax ID: 675609

GC content

@refGC-contentmethod
1810667.3
6777067.3high performance liquid chromatography (HPLC)

External links

@ref: 18106

culture collection no.: DSM 25747, JCM 15425, KACC 12736

straininfo link

  • @ref: 86653
  • straininfo: 402902

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20584818Nevskia terrae sp. nov., isolated from soil.Kim SJ, Weon HY, Kim YS, Park IC, Son JA, Kwon SWInt J Syst Evol Microbiol10.1099/ijs.0.021238-02010DNA, Bacterial/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Xanthomonadaceae/*classification/genetics/*isolation & purification/metabolismMetabolism
Phylogeny30506271Nevskia lacus sp. nov., a gammaproteobacterium isolated from a eutrophic lake.Cui Y, Chun SJ, Cho AR, Wong SK, Lee HG, Oh HM, Ahn CYAntonie Van Leeuwenhoek10.1007/s10482-018-1206-62018Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Eutrophication, Fatty Acids/chemistry/metabolism, Lakes/chemistry/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Xanthomonadaceae/classification/genetics/*isolation & purification/metabolismMetabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
18106Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25747)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25747
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29795Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2617328776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86653Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID402902.1StrainInfo: A central database for resolving microbial strain identifiers