Strain identifier

BacDive ID: 17599

Type strain: Yes

Species: Xanthomonas cynarae

Strain Designation: A960701

Culture col. no.: DSM 16794, CFBP 4188, CIP 106774

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6606

BacDive-ID: 17599

DSM-Number: 16794

keywords: Bacteria, 16S sequence, genome sequence, mesophilic, plant pathogen

description: Xanthomonas cynarae A960701 is a mesophilic plant pathogen that was isolated from Cynara scolymus.

strain history: <- CFBP <- J.-L. Tanguy; A960701

doi: 10.13145/bacdive17599.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Xanthomonas
  • species: Xanthomonas cynarae
  • full scientific name: Xanthomonas cynarae Trébaol et al. 2000
  • synonyms

    • @ref: 20215
    • synonym: Xanthomonas gardneri

@ref: 6606

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Xanthomonadaceae

genus: Xanthomonas

species: Xanthomonas cynarae

full scientific name: Xanthomonas cynarae Trébaol et al. 2000 emend. Timilsina et al. 2019

strain designation: A960701

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6606YPGA (DSMZ Medium 1015)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1015.pdf
39578MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)

culture temp

@refgrowthtypetemperaturerange
6606positivegrowth28mesophilic
39578positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 6606
  • sample type: Cynara scolymus
  • host species: Cynara scolymus
  • geographic location: Brittany
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Herbaceous plants (Grass,Crops)

Safety information

risk assessment

  • @ref: 6606
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6606
  • description: Xanthomonas cynarae 16S ribosomal RNA gene, partial sequence
  • accession: AF208315
  • length: 1552
  • database: ena
  • NCBI tax ID: 109214

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Xanthomonas cynarae CFBP4188GCA_002939985scaffoldncbi109214
66792Xanthomonas cynarae strain CFBP4188109214.3wgspatric109214

GC content

  • @ref: 6606
  • GC-content: 63
  • method: thermal denaturation, midpoint method (Tm)

External links

@ref: 6606

culture collection no.: DSM 16794, CFBP 4188, CIP 106774

straininfo link

@refpassport
20218http://www.straininfo.net/strains/534297
20218http://www.straininfo.net/strains/156268
20218http://www.straininfo.net/strains/156267

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6606Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16794)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16794
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39578Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18941
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)