Strain identifier
BacDive ID: 17562
Type strain: 
Species: Stenotrophomonas sp.
Strain history: IAM 1667 <-- IFO 3084 <-- Tokai Reg. Fish. Res. Lab..
NCBI tax ID(s): 866796 (species)
version 8.1 (current version)
General
@ref: 1080
BacDive-ID: 17562
DSM-Number: 2408
keywords: 16S sequence, Bacteria, mesophilic
description: Stenotrophomonas sp. DSM 2408 is a mesophilic bacterium that was isolated from fish.
NCBI tax id
- NCBI tax id: 866796
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1080 | <- IFO (Flavobacterium lutescens) <- Tokai Regional Fisheries Res. Lab. (Achromobacter liquidum). Shows greater than 99% 16S rDNA sequence similarity with Stenotrophomonas koreensis |
| 67770 | IAM 1667 <-- IFO 3084 <-- Tokai Reg. Fish. Res. Lab.. |
doi: 10.13145/bacdive17562.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Stenotrophomonas
- species: Stenotrophomonas sp.
- full scientific name: Stenotrophomonas Palleroni and Bradbury 1993
@ref: 1080
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Lysobacteraceae
genus: Stenotrophomonas
species: Stenotrophomonas sp.
full scientific name: Stenotrophomonas sp.
type strain: no
Culture and growth conditions
culture medium
- @ref: 1080
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1080 | positive | growth | 30 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
compound production
| @ref | compound |
|---|---|
| 1080 | L lysine-alpha-ketoglutarate aminotransferase |
| 1080 | L lysine-epsilon-transaminase |
Isolation, sampling and environmental information
isolation
- @ref: 1080
- sample type: fish
isolation source categories
- Cat1: #Host
- Cat2: #Fishes
taxonmaps
- @ref: 69479
- File name: preview.99_2232.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_26;97_1429;98_1740;99_2232&stattab=map
- Last taxonomy: Stenotrophomonas
- 16S sequence: AB680009
- Sequence Identity:
- Total samples: 768
- soil counts: 101
- aquatic counts: 259
- animal counts: 353
- plant counts: 55
Sequence information
16S sequences
- @ref: 20218
- description: 'Flavobacterium' lutescens gene for 16S rRNA, partial sequence, strain: NBRC 3084
- accession: AB680009
- length: 1470
- database: ena
- NCBI tax ID: 255
External links
@ref: 1080
culture collection no.: DSM 2408, ATCC 25311, IFO 3084, NBRC 3084, JCM 20244, IAM 1667
straininfo link
- @ref: 86558
- straininfo: 13928
literature
- topic: Transcriptome
- Pubmed-ID: 21247714
- title: Delineation of Stenotrophomonas spp. by multi-locus sequence analysis and MALDI-TOF mass spectrometry.
- authors: Vasileuskaya-Schulz Z, Kaiser S, Maier T, Kostrzewa M, Jonas D
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2010.11.011
- year: 2011
- mesh: Bacteriological Techniques/*methods, Multilocus Sequence Typing/*methods, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/*methods, Stenotrophomonas/chemistry/*classification/genetics
- topic2: Phylogeny
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1080 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2408) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2408 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 86558 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID13928.1 | StrainInfo: A central database for resolving microbial strain identifiers |