Strain identifier

BacDive ID: 17558

Type strain: No

Species: Stenotrophomonas acidaminiphila

Strain history: CIP <- 2000, H. Macarie, U.A.M.I., Mexico: strain AMX 37 <- S. Thierry

NCBI tax ID(s): 128780 (species)

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General

@ref: 4910

BacDive-ID: 17558

DSM-Number: 13118

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Stenotrophomonas acidaminiphila DSM 13118 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from industrial waste water.

NCBI tax id

  • NCBI tax id: 128780
  • Matching level: species

strain history

@refhistory
4910<- A. S. Ouattara <- S. Thierry, Laboratoire de Microbiologie IRD, UAM, Iztapalapa, Mexico; AMX 37
115993CIP <- 2000, H. Macarie, U.A.M.I., Mexico: strain AMX 37 <- S. Thierry

doi: 10.13145/bacdive17558.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Stenotrophomonas
  • species: Stenotrophomonas acidaminiphila
  • full scientific name: Stenotrophomonas acidaminiphila Assih et al. 2002

@ref: 4910

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Lysobacteraceae

genus: Stenotrophomonas

species: Stenotrophomonas acidaminiphila

full scientific name: Stenotrophomonas acidaminiphila Assih et al. 2002

type strain: no

Morphology

cell morphology

  • @ref: 115993
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 115993
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4910TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://mediadive.dsmz.de/medium/545Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
4910REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://mediadive.dsmz.de/medium/1aName: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
39519MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
115993CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
4910positivegrowth35mesophilic
39519positivegrowth30mesophilic
60394positivegrowth30mesophilic
115993positivegrowth25-41
115993nogrowth5psychrophilic
115993nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
60394aerobe
115993obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
115993NaClpositivegrowth0-4 %
115993NaClnogrowth6 %
115993NaClnogrowth8 %
115993NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
11599316947citrate-carbon source
1159934853esculin+hydrolysis
11599317632nitrate-reduction
11599316301nitrite+reduction
11599317234glucose-degradation
11599317632nitrate-respiration

antibiotic resistance

  • @ref: 115993
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11599335581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
115993oxidase+
115993beta-galactosidase-3.2.1.23
115993alcohol dehydrogenase-1.1.1.1
115993gelatinase+/-
115993amylase-
115993DNase+
115993caseinase-3.4.21.50
115993catalase+1.11.1.6
115993tween esterase+
115993lecithinase-
115993lipase-
115993lysine decarboxylase-4.1.1.18
115993ornithine decarboxylase-4.1.1.17
115993protease-
115993tryptophan deaminase-
115993urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
115993-+++-++-+-++---+-+--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
60394-----+--+-+-++------+

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
115993++--+----++------------------------------------------------+---------------+--+-------+-+-+++++-+--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dateisolation date
4910industrial waste waterMexicoMEXNorth America
60394Industrial waste waterMexicoMEXNorth America1999
115993Environment, MudMexicoMEXNorth America1999

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Industrial wastewater

taxonmaps

  • @ref: 69479
  • File name: preview.99_4737.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_26;97_288;98_321;99_4737&stattab=map
  • Last taxonomy: Stenotrophomonas sp.
  • 16S sequence: AF273079
  • Sequence Identity:
  • Total samples: 7580
  • soil counts: 1383
  • aquatic counts: 3113
  • animal counts: 2568
  • plant counts: 516

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
49101Risk group (German classification)
1159931Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Paenibacillus borealis gene for 16S rRNA, partial sequenceAB0733641508ena160799
20218Stenotrophomonas acidaminiphila 16S ribosomal RNA gene, partial sequenceAF2730791542ena128780

External links

@ref: 4910

culture collection no.: DSM 13118, ATCC 700917, CCUG 54933, CIP 106455, AMX 37

straininfo link

  • @ref: 86554
  • straininfo: 45447

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4910Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13118)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13118
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39519Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18587
60394Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 54933)https://www.ccug.se/strain?id=54933
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86554Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID45447.1StrainInfo: A central database for resolving microbial strain identifiers
115993Curators of the CIPCollection of Institut Pasteur (CIP 106455)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106455