Strain identifier
BacDive ID: 17529
Type strain: 
Species: Ignatzschineria ureiclastica
Strain Designation: FFA3
Strain history: <- Y. S. Shouche, NCCS Complex, Univ. of Pune Campus, India; FFA3 <- A. K. Gupta
NCBI tax ID(s): 472582 (species)
version 8.1 (current version)
General
@ref: 16271
BacDive-ID: 17529
DSM-Number: 22310
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Ignatzschineria ureiclastica FFA3 is a Gram-negative bacterium that was isolated from mid gut contents of adult flesh flies .
NCBI tax id
- NCBI tax id: 472582
- Matching level: species
strain history
- @ref: 16271
- history: <- Y. S. Shouche, NCCS Complex, Univ. of Pune Campus, India; FFA3 <- A. K. Gupta
doi: 10.13145/bacdive17529.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Cardiobacteriales
- family: Ignatzschineriaceae
- genus: Ignatzschineria
- species: Ignatzschineria ureiclastica
- full scientific name: Ignatzschineria ureiclastica Gupta et al. 2011
@ref: 16271
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Oceanospirillales
family: Gammaproteobacteria, not assigned to family
genus: Ignatzschineria
species: Ignatzschineria ureiclastica
full scientific name: Ignatzschineria ureiclastica Gupta et al. 2011
strain designation: FFA3
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.989
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.994 |
Isolation, sampling and environmental information
isolation
- @ref: 16271
- sample type: mid gut contents of adult flesh flies (Diptera: Sarcophagidae)
- host species: Diptera: Sarcophagidae
- geographic location: North Western Ghats, Pune
- country: India
- origin.country: IND
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Arthropoda | #Insecta |
| #Host Body-Site | #Gastrointestinal tract |
taxonmaps
- @ref: 69479
- File name: preview.99_8208.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16053;96_3775;97_4651;98_5972;99_8208&stattab=map
- Last taxonomy: Ignatzschineria
- 16S sequence: EU008089
- Sequence Identity:
- Total samples: 617
- soil counts: 98
- aquatic counts: 108
- animal counts: 363
- plant counts: 48
Safety information
risk assessment
- @ref: 16271
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16271
- description: Ignatzschineria ureiclastica strain FFA3 16S ribosomal RNA gene, partial sequence
- accession: EU008089
- length: 1545
- database: ena
- NCBI tax ID: 472582
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Ignatzschineria ureiclastica KCTC 22644 | GCA_014652035 | scaffold | ncbi | 472582 |
| 66792 | Ignatzschineria ureiclastica KCTC 22644 | GCA_003121845 | contig | ncbi | 472582 |
| 66792 | Ignatzschineria ureiclastica strain KCTC 22644 | 472582.7 | wgs | patric | 472582 |
| 66792 | Ignatzschineria ureiclastica strain KCTC 22644 | 472582.3 | wgs | patric | 472582 |
| 66792 | Ignatzschineria ureiclastica KCTC 22644 | 2831380896 | draft | img | 472582 |
GC content
- @ref: 16271
- GC-content: 40.1
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 93.437 | no |
| flagellated | no | 97.073 | no |
| gram-positive | no | 97.882 | no |
| anaerobic | no | 96.392 | no |
| aerobic | yes | 60.942 | no |
| halophile | no | 53.665 | no |
| spore-forming | no | 98.335 | no |
| glucose-util | no | 65.47 | no |
| thermophile | no | 99.536 | no |
| glucose-ferment | no | 78.353 | no |
External links
@ref: 16271
culture collection no.: DSM 22310, KCTC 22644, NCIM 5326
literature
- topic: Phylogeny
- Pubmed-ID: 20584814
- title: Ignatzschineria indica sp. nov. and Ignatzschineria ureiclastica sp. nov., isolated from adult flesh flies (Diptera: Sarcophagidae).
- authors: Gupta AK, Dharne MS, Rangrez AY, Verma P, Ghate HV, Rohde M, Patole MS, Shouche YS
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.018622-0
- year: 2010
- mesh: Aerobiosis, Animals, Base Composition, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gastrointestinal Tract/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sarcophagidae/*microbiology, Sequence Analysis, DNA, Xanthomonadaceae/*classification/genetics/*isolation & purification/physiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 16271 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22310) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22310 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 |