Strain identifier

BacDive ID: 17527

Type strain: Yes

Species: Ignatzschineria larvae

Strain Designation: L1/68

Strain history: CIP <- 2001, E. Toth, Eotvos Lorand Univ., Budapest, Hungary: strain L1/68

NCBI tax ID(s): 1111732 (strain), 112009 (species)

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General

@ref: 4969

BacDive-ID: 17527

DSM-Number: 13226

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Ignatzschineria larvae L1/68 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from L1 and L2 stage larvae of the obligate parasitic fly Wohlfarthia magnifica.

NCBI tax id

NCBI tax idMatching level
1111732strain
112009species

strain history

@refhistory
4969<- E. Stackebrandt; L1/68
406772001, E. Toth, Hungary: strain L1/68
120561CIP <- 2001, E. Toth, Eotvos Lorand Univ., Budapest, Hungary: strain L1/68

doi: 10.13145/bacdive17527.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Cardiobacteriales
  • family: Ignatzschineriaceae
  • genus: Ignatzschineria
  • species: Ignatzschineria larvae
  • full scientific name: Ignatzschineria larvae (Tóth et al. 2001) Tóth et al. 2007

  • synonyms

    • @ref: 20215
    • synonym: Schineria larvae

@ref: 4969

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Oceanospirillales

family: Lysobacteraceae

genus: Ignatzschineria

species: Ignatzschineria larvae

full scientific name: Ignatzschineria larvae (Tóth et al. 2001) Tóth et al. 2007

strain designation: L1/68

type strain: yes

Morphology

cell morphology

  • @ref: 120561
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 120561
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4969PSEUDOMONAS AGAR F (DSMZ Medium 907)yeshttps://mediadive.dsmz.de/medium/907Name: PSEUDOMONAS AGAR F (DSMZ Medium 907) Composition: Agar 15.0 g/l Glycerol 10.0 g/l Proteose peptone 10.0 g/l Tryptone 10.0 g/l MgSO4 1.5 g/l K2HPO4 1.5 g/l Distilled water
40677MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120561CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
4969positivegrowth30mesophilic
40677positivegrowth37mesophilic
60215positivegrowth37mesophilic
120561positivegrowth25-41
120561nogrowth5psychrophilic
120561nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
60215aerobe
120561obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
120561NaClpositivegrowth0-6 %
120561NaClnogrowth8 %
120561NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12056116947citrate-carbon source
1205614853esculin-hydrolysis
12056117632nitrate-reduction
12056116301nitrite-reduction
12056117632nitrate-respiration

antibiotic resistance

  • @ref: 120561
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 120561
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
120561oxidase+
120561beta-galactosidase+3.2.1.23
120561alcohol dehydrogenase-1.1.1.1
120561gelatinase-
120561amylase-
120561DNase-
120561caseinase-3.4.21.50
120561catalase+1.11.1.6
120561tween esterase-
120561lecithinase-
120561lipase-
120561lysine decarboxylase-4.1.1.18
120561ornithine decarboxylase-4.1.1.17
120561protease-
120561tryptophan deaminase+
120561urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120561--+--------+--------

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentsampling dateisolation date
4969L1 and L2 stage larvae of the obligate parasitic fly Wohlfarthia magnificaWohlfahrtia magniticaNorth-East Hungary, Mezöfalva State FarmHungaryHUNEurope
60215Larval stages of Wohlfahrtia magnifica maggotsHungaryHUNEurope1997
120561Animal, Larval stages of Wohlfahrtia magnifica maggotsHungaryHUNEurope1997

isolation source categories

  • Cat1: #Host
  • Cat2: #Arthropoda
  • Cat3: #Insecta

taxonmaps

  • @ref: 69479
  • File name: preview.99_8208.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16053;96_3775;97_4651;98_5972;99_8208&stattab=map
  • Last taxonomy: Ignatzschineria
  • 16S sequence: AJ252143
  • Sequence Identity:
  • Total samples: 617
  • soil counts: 98
  • aquatic counts: 108
  • animal counts: 363
  • plant counts: 48

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
49691Risk group (German classification)
1205611Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Schineria larvae 16S rRNA gene, strain L1/68
  • accession: AJ252143
  • length: 1514
  • database: ena
  • NCBI tax ID: 1111732

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ignatzschineria larvae DSM 13226GCA_000510805scaffoldncbi1111732
66792Ignatzschineria larvae DSM 132261111732.3wgspatric1111732
66792Ignatzschineria larvae DSM 132262513237114draftimg1111732

GC content

  • @ref: 4969
  • GC-content: 42

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno91.996no
flagellatedno96.356no
gram-positiveno97.958no
anaerobicno97.768yes
halophileno57.33no
spore-formingno98.33no
thermophileno99.574yes
glucose-utilno65.176no
aerobicyes68.722yes
glucose-fermentno76.595no

External links

@ref: 4969

culture collection no.: DSM 13226, CCUG 54526, NCAIM B01938, CIP 107108, NCAIM B1938

straininfo link

  • @ref: 86524
  • straininfo: 49438

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18398205Wohlfahrtiimonas chitiniclastica gen. nov., sp. nov., a new gammaproteobacterium isolated from Wohlfahrtia magnifica (Diptera: Sarcophagidae).Toth EM, Schumann P, Borsodi AK, Keki Z, Kovacs AL, Marialigeti KInt J Syst Evol Microbiol10.1099/ijs.0.65324-02008Animals, Base Composition, DNA, Bacterial/chemistry/genetics, Diptera/*microbiology, Fatty Acids/metabolism, Gammaproteobacteria/*classification/genetics/*isolation & purification/metabolism, Genes, Bacterial, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Terminology as TopicMetabolism
Phylogeny20584814Ignatzschineria indica sp. nov. and Ignatzschineria ureiclastica sp. nov., isolated from adult flesh flies (Diptera: Sarcophagidae).Gupta AK, Dharne MS, Rangrez AY, Verma P, Ghate HV, Rohde M, Patole MS, Shouche YSInt J Syst Evol Microbiol10.1099/ijs.0.018622-02010Aerobiosis, Animals, Base Composition, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gastrointestinal Tract/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sarcophagidae/*microbiology, Sequence Analysis, DNA, Xanthomonadaceae/*classification/genetics/*isolation & purification/physiologyGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4969Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13226)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13226
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40677Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4508
60215Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 54526)https://www.ccug.se/strain?id=54526
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86524Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49438.1StrainInfo: A central database for resolving microbial strain identifiers
120561Curators of the CIPCollection of Institut Pasteur (CIP 107108)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107108