Strain identifier

BacDive ID: 175

Type strain: Yes

Species: Actinomyces catuli

Strain Designation: M1192/98/1

Strain history: CIP <- 2000, CCUG <- 1999, M.D. Collins, IFR, Reading, UK: strain M1192/98/1

NCBI tax ID(s): 119495 (species)

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General

@ref: 5803

BacDive-ID: 175

DSM-Number: 15415

keywords: 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, rod-shaped, colony-forming, animal pathogen

description: Actinomyces catuli M1192/98/1 is a microaerophile, mesophilic, Gram-positive animal pathogen that forms irregular colonies and was isolated from dog.

NCBI tax id

  • NCBI tax id: 119495
  • Matching level: species

strain history

@refhistory
5803<- CCUG <- M. D. Collins, IFR Reading; M1192/98/1 <- G. Foster, SAC, Inverness, UK
117219CIP <- 2000, CCUG <- 1999, M.D. Collins, IFR, Reading, UK: strain M1192/98/1

doi: 10.13145/bacdive175.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Actinomyces
  • species: Actinomyces catuli
  • full scientific name: Actinomyces catuli Hoyles et al. 2001

@ref: 5803

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Actinomyces

species: Actinomyces catuli

full scientific name: Actinomyces catuli Hoyles et al. 2001

strain designation: M1192/98/1

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotility
23111positiverod-shapedno
117219positiverod-shapedno

colony morphology

@refcolony colorcolony shape
23111whiteirregular
117219

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5803BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
5803COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23111Columbia agar with 5% horse bloodyes
32978MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
117219CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
5803positivegrowth37mesophilic
23111growth37mesophilic
32978positivegrowth37mesophilic
55186positivegrowth37mesophilic
117219positivegrowth25-41
117219nogrowth10psychrophilic
117219nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
5803microaerophile
23111facultative anaerobe
55186microaerophile
117219facultative anaerobe

halophily

  • @ref: 117219
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2311123456cyclodextrin-builds acid from
2311118333D-arabitol-builds acid from
2311128087glycogen-builds acid from
2311129864mannitol-builds acid from
231116731melezitose-builds acid from
2311127941pullulan-builds acid from
2311130911sorbitol-builds acid from
2311133954tagatose-builds acid from
2311118333D-arabitol-fermentation
2311128087glycogen-fermentation
2311129864mannitol-fermentation
231115291gelatin-hydrolysis
23111606565hippurate-hydrolysis
2311127941pullulan-hydrolysis
2311117634D-glucose+builds acid from
2311116634raffinose+builds acid from
2311165327D-xylose+builds acid from
2311117716lactose+builds acid from
2311117306maltose+builds acid from
2311133942ribose+builds acid from
2311117992sucrose+builds acid from
2311127082trehalose+builds acid from
2311165327D-xylose+fermentation
2311117234glucose+fermentation
2311133942ribose+fermentation
2311117992sucrose+fermentation
2311127082trehalose+fermentation
231114853esculin+hydrolysis
2311117632nitrate+reduction
2311130849L-arabinose+/-builds acid from
2311128053melibiose+/-builds acid from
23111320061methyl alpha-D-glucopyranoside+/-builds acid from
2311130849L-arabinose+/-fermentation
231116731melezitose+/-fermentation
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose-builds acid from
6837162318D-lyxose+builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen+builds acid from
6837128017starch+builds acid from
6837116634raffinose+builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117814salicin+builds acid from
683714853esculin+builds acid from
6837118305arbutin+builds acid from
6837127613amygdalin+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose+builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose-builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose+builds acid from
6837116988D-ribose+builds acid from
6837130849L-arabinose+builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
11721916947citrate-carbon source
1172194853esculin+hydrolysis
117219606565hippurate-hydrolysis
11721917632nitrate+reduction
11721916301nitrite-reduction
11721917632nitrate+respiration
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose+fermentation
6837916988D-ribose+fermentation
6837965327D-xylose+fermentation
6837916899D-mannitol-fermentation
6837917306maltose+fermentation
6837917716lactose+fermentation
6837917992sucrose+fermentation
6837928087glycogen-fermentation
6838016199urea-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838027897tryptophan-energy source
6838129016arginine+hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose+builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose+builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
11721935581indoleno
6838035581indoleno
6838115688acetoinno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6838115688acetoin-
6838035581indole-
11721915688acetoin-
11721917234glucose+

enzymes

@refvalueactivityec
23111acid phosphatase+3.1.3.2
23111alkaline phosphatase-3.1.3.1
23111alpha-fucosidase-3.2.1.51
23111alpha-galactosidase+/-3.2.1.22
23111alpha-glucosidase+3.2.1.20
23111alpha-mannosidase-3.2.1.24
23111arginine dihydrolase+/-3.5.3.6
23111beta-galactosidase+3.2.1.23
23111beta-glucosidase+3.2.1.21
23111beta-glucuronidase+3.2.1.31
23111beta-mannosidase-3.2.1.25
23111catalase+/-1.11.1.6
23111chymotrypsin-3.4.4.5
23111cystine arylamidase-3.4.11.3
23111esterase (C 4)+/-
23111esterase lipase (C 8)+
23111glycyl tryptophan arylamidase-
23111leucine arylamidase+3.4.11.1
23111lipase (C 14)-
23111N-acetyl-beta-glucosaminidase+/-3.2.1.52
23111pyrazinamidase+3.5.1.B15
23111pyroglutamic acid arylamidase-
23111pyrrolidonyl arylamidase+3.4.19.3
23111trypsin-3.4.21.4
23111urease-3.5.1.5
23111valine arylamidase-
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase+3.2.1.22
68381beta-glucuronidase+3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase+3.5.3.6
68380glutamyl-glutamate arylamidase-
68380glycin arylamidase-
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase-3.4.11.1
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380urease-3.5.1.5
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase+3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase+3.5.1.B15
117219oxidase+
117219beta-galactosidase+3.2.1.23
117219alcohol dehydrogenase-1.1.1.1
117219gelatinase-
117219amylase-
117219DNase+
117219caseinase+3.4.21.50
117219catalase+1.11.1.6
117219tween esterase-
117219gamma-glutamyltransferase-2.3.2.2
117219lecithinase-
117219lipase-
117219lysine decarboxylase-4.1.1.18
117219ornithine decarboxylase-4.1.1.17
117219phenylalanine ammonia-lyase-4.3.1.24
117219protease-
117219tryptophan deaminase-
117219urease-3.5.1.5

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
55186+++-+++-+---+++-+++-+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
55186--++-+----++++++++--
117219--++-+----+-+++++---

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
117219+/---+++---+++--+------+/-+++++/-+++/-++--+++-+++--------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
5803--++-+++/--+++--+/---+/-+/--++-++/-----
55186-+++-+++++++--+--++-++-++-+-+

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
55186+++++-+--+++++----+------++-+---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
5803dogInvernessUnited KingdomGBREurope
231111998
55186Dog - no other information availableInvernessUnited KingdomGBREurope1998

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Canidae (Dog)

taxonmaps

  • @ref: 69479
  • File name: preview.99_96160.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_124;96_39346;97_50121;98_65947;99_96160&stattab=map
  • Last taxonomy: Actinomyces catuli subclade
  • 16S sequence: AJ276805
  • Sequence Identity:
  • Total samples: 1855
  • soil counts: 51
  • aquatic counts: 35
  • animal counts: 1767
  • plant counts: 2

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
5803yes2Risk group (German classification)
1172192Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Actinomyces catuli partial 16S rRNA gene, strain CCUG 41709AJ2493281400ena119495
5803Actinomyces catuli partial 16S rRNA geneAJ2768051400ena119495

External links

@ref: 5803

culture collection no.: DSM 15415, CCUG 41709, CIP 106507

straininfo link

  • @ref: 69857
  • straininfo: 87798

literature

  • topic: Phylogeny
  • Pubmed-ID: 11321114
  • title: Actinomyces catuli sp. nov., from dogs.
  • authors: Hoyles L, Falsen E, Pascual C, Sjoden B, Foster G, Henderson D, Collins MD
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/00207713-51-2-679
  • year: 2001
  • mesh: Actinomyces/*classification/isolation & purification, Animals, Bacterial Typing Techniques, Dogs/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Terminology as Topic
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5803Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15415)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15415
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23111L Hoyles, E Falsen, C Pascual, B Sjödén, G Foster, D Henderson, M D Collins10.1099/00207713-51-2-679Actinomyces catuli sp. nov., from dogsIJSEM 51: 679-682 200111321114
32978Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18646
55186Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 41709)https://www.ccug.se/strain?id=41709
68371Automatically annotated from API 50CH acid
68379Automatically annotated from API Coryne
68380Automatically annotated from API rID32A
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69857Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID87798.1StrainInfo: A central database for resolving microbial strain identifiers
117219Curators of the CIPCollection of Institut Pasteur (CIP 106507)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20106507