Strain identifier

BacDive ID: 17470

Type strain: Yes

Species: Luteimonas marina

Strain Designation: FR1330

Strain history: <- J Chun, Seoul National Univ.

NCBI tax ID(s): 488485 (species)

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General

@ref: 16624

BacDive-ID: 17470

DSM-Number: 22943

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Luteimonas marina FR1330 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from seawater.

NCBI tax id

  • NCBI tax id: 488485
  • Matching level: species

strain history

@refhistory
16624<- KCTC <- J. Chun, Seoul Natl. Univ., Republic of Korea
67770J. Chun FR1330.
67771<- J Chun, Seoul National Univ.

doi: 10.13145/bacdive17470.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Luteimonas
  • species: Luteimonas marina
  • full scientific name: Luteimonas marina Baik et al. 2008

@ref: 16624

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Xanthomonadales

family: Lysobacteraceae

genus: Luteimonas

species: Luteimonas marina

full scientific name: Luteimonas marina Baik et al. 2008

strain designation: FR1330

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
31186negative1.4-2 µm0.5-0.6 µmrod-shapedno
67771negative

pigmentation

  • @ref: 31186
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 16624
  • name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535b
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM (DSMZ Medium 535b) Composition: Trypticase soy broth 30.0 g/l Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l K2HPO4 2.5 g/l D(+)-Glucose 2.5 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16624positivegrowth28mesophilic
31186positivegrowth20-42
31186positiveoptimum30mesophilic
67770positivegrowth25mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
31186positivegrowth06-10alkaliphile
31186positiveoptimum8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31186aerobe
67771aerobe

spore formation

  • @ref: 31186
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
31186NaClpositivegrowth0-1 %
31186NaClpositiveoptimum0-1 %

observation

@refobservation
31186aggregates in chains
67770quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3118630089acetate+carbon source
3118616449alanine+carbon source
3118640585alpha-cyclodextrin+carbon source
3118622599arabinose+carbon source
3118617057cellobiose+carbon source
3118623652dextrin+carbon source
3118617234glucose+carbon source
3118629987glutamate+carbon source
3118617306maltose+carbon source
3118628053melibiose+carbon source
3118618257ornithine+carbon source
3118626271proline+carbon source
3118651850methyl pyruvate+carbon source
3118617822serine+carbon source
3118630031succinate+carbon source
3118626986threonine+carbon source
3118653423tween 40+carbon source
3118653426tween 80+carbon source

enzymes

@refvalueactivityec
31186catalase+1.11.1.6
31186cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
16624seawaternear Ganghwa Island (37°36'22.3'' N 126°22'59.4'' E)Republic of KoreaKORAsia37.6062126.383
67770Seawater sample collected near Ganghwa IslandRepublic of KoreaKORAsia
67771From seawaterKangwhaRepublic of KoreaKORAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_141360.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_1838;97_25889;98_32870;99_141360&stattab=map
  • Last taxonomy: Luteimonas marina
  • 16S sequence: EU295459
  • Sequence Identity:
  • Total samples: 321
  • soil counts: 148
  • aquatic counts: 78
  • animal counts: 51
  • plant counts: 44

Safety information

risk assessment

  • @ref: 16624
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16624
  • description: Luteimonas marina strain FR1330 16S ribosomal RNA gene, partial sequence
  • accession: EU295459
  • length: 1423
  • database: ena
  • NCBI tax ID: 488485

Genome sequences

  • @ref: 66792
  • description: Luteimonas marina FR1330
  • accession: GCA_007859325
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 488485

GC content

@refGC-contentmethod
1662467.6thermal denaturation, midpoint method (Tm)
3118667.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno94.041yes
gram-positiveno98.09yes
anaerobicno99.515no
aerobicyes93.268yes
halophileno93.505yes
spore-formingno96.365yes
glucose-utilyes90.346yes
thermophileno98.019yes
motileno75.073yes
glucose-fermentno87.935no

External links

@ref: 16624

culture collection no.: DSM 22943, IMSNU 60306, JCM 12488, KCTC 12327

straininfo link

  • @ref: 86466
  • straininfo: 232817

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19060080Luteimonas marina sp. nov., isolated from seawater.Baik KS, Park SC, Kim MS, Kim EM, Park C, Chun J, Seong CNInt J Syst Evol Microbiol10.1099/ijs.0.2008/000281-02008Fatty Acids/analysis, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Species Specificity, Xanthomonadaceae/chemistry/*classification/genetics/*physiologyGenetics
Phylogeny23504969Luteimonas huabeiensis sp. nov., isolated from stratum water.Wu G, Liu Y, Li Q, Du H, You J, Li H, Ke C, Zhang X, Yu J, Zhao TInt J Syst Evol Microbiol10.1099/ijs.0.049718-02013Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Oil and Gas Fields/microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Ubiquinone/analysis, *Water Microbiology, Xanthomonadaceae/*classification/genetics/isolation & purificationGenetics
Phylogeny26782356Luteimonas terrae sp. nov., isolated from rhizosphere soil of Radix ophiopogonis.Ngo HTT, Yin CSInt J Syst Evol Microbiol10.1099/ijsem.0.0009012016Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purificationTranscriptome
Phylogeny33258058Luteimonas wenzhouensis Sp. Nov., A Chitinolytic Bacterium Isolated from a Landfill Soil.Zhou J, Chen J, Ma J, Xu N, Xin F, Zhang W, Zhang H, Dong W, Jiang MCurr Microbiol10.1007/s00284-020-02293-92020Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids, *Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil, Waste Disposal Facilities, XanthomonadaceaeTranscriptome
Phylogeny35391590Description and genome analysis of Luteimonas viscosa sp. nov., a novel bacterium isolated from soil of a sunflower field.Chen Y, Zhang Y, Xin D, Luo X, Pang H, Li Y, Zhang JAntonie Van Leeuwenhoek10.1007/s10482-022-01730-y2022Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, *Helianthus, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil, Soil MicrobiologyTranscriptome
Phylogeny35471135Luteimonas saliphila sp. nov. and Luteimonas salinisoli sp. nov., two novel strains isolated from saline soils.Sun JQ, Huang XX, Xu L, Wei HMInt J Syst Evol Microbiol10.1099/ijsem.0.0053342022Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *SoilTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
16624Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22943)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22943
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31186Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2751328776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86466Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID232817.1StrainInfo: A central database for resolving microbial strain identifiers