Strain identifier
BacDive ID: 17465
Type strain: 
Species: Luteibacter anthropi
Strain history: <- P. Kämpfer, Institut Angewandte Mikrobiologie, Univ. Giessen, Germany <- CCUG <- Blood Dept., PHL, Göteborg, Sweden
NCBI tax ID(s): 564369 (species)
version 8.1 (current version)
General
@ref: 16744
BacDive-ID: 17465
DSM-Number: 23190
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, human pathogen
description: Luteibacter anthropi DSM 23190 is an aerobe, mesophilic, Gram-negative human pathogen that was isolated from blood of a 3-year-old boy.
NCBI tax id
- NCBI tax id: 564369
- Matching level: species
strain history
- @ref: 16744
- history: <- P. Kämpfer, Institut Angewandte Mikrobiologie, Univ. Giessen, Germany <- CCUG <- Blood Dept., PHL, Göteborg, Sweden
doi: 10.13145/bacdive17465.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Rhodanobacteraceae
- genus: Luteibacter
- species: Luteibacter anthropi
- full scientific name: Luteibacter anthropi Kämpfer et al. 2009
@ref: 16744
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Rhodanobacteraceae
genus: Luteibacter
species: Luteibacter anthropi
full scientific name: Luteibacter anthropi Kämpfer et al. 2009
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell shape | motility | confidence |
|---|---|---|---|---|---|
| 29232 | negative | 3 µm | rod-shaped | yes | |
| 69480 | yes | 97.585 | |||
| 69480 | negative | 99.995 |
pigmentation
- @ref: 29232
- production: yes
multimedia
- @ref: 16744
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_23190.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 16744
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16744 | positive | growth | 28 | mesophilic |
| 29232 | positive | growth | 15-37 | |
| 29232 | positive | optimum | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 29232 | positive | growth | 4.5-9.5 | alkaliphile |
| 29232 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 29232
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.993 |
observation
- @ref: 29232
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29232 | 17128 | adipate | + | carbon source |
| 29232 | 22599 | arabinose | + | carbon source |
| 29232 | 16947 | citrate | + | carbon source |
| 29232 | 17234 | glucose | + | carbon source |
| 29232 | 25115 | malate | + | carbon source |
| 29232 | 17306 | maltose | + | carbon source |
| 29232 | 29864 | mannitol | + | carbon source |
| 29232 | 37684 | mannose | + | carbon source |
| 29232 | 506227 | N-acetylglucosamine | + | carbon source |
| 29232 | 18401 | phenylacetate | + | carbon source |
| 29232 | 4853 | esculin | + | hydrolysis |
enzymes
- @ref: 29232
- value: cytochrome oxidase
- activity: +
- ec: 1.9.3.1
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 16744 | blood of a 3-year-old boy | Göteborg | Sweden | SWE | Europe | |
| 48139 | Human blood,central venous catheter,3-yr-old boy | Göteborg | Sweden | SWE | Europe | 1989-08-05 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | |
| #Infection | #Patient | |
| #Host Body Product | #Fluids | #Blood |
| #Host | #Human | #Child |
| #Host | #Human | #Male |
Safety information
risk assessment
- @ref: 16744
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16744
- description: Luteibacter anthropi partial 16S rRNA gene, type strain CCUG 25036T
- accession: FM212561
- length: 1429
- database: ena
- NCBI tax ID: 564369
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Luteibacter anthropi CCUG 25036 | GCA_011759365 | contig | ncbi | 564369 |
| 66792 | Luteibacter anthropi strain CCUG 25036 | 564369.3 | wgs | patric | 564369 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.147 | yes |
| anaerobic | no | 98.959 | no |
| halophile | no | 95.947 | no |
| spore-forming | no | 93.788 | no |
| glucose-util | yes | 93.304 | yes |
| thermophile | no | 99.487 | yes |
| flagellated | no | 82.785 | no |
| motile | yes | 88.859 | yes |
| aerobic | yes | 89.568 | yes |
| glucose-ferment | no | 87.808 | no |
External links
@ref: 16744
culture collection no.: DSM 23190, CCM 7598, CCUG 25036
straininfo link
- @ref: 86461
- straininfo: 108245
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 19628591 | Luteibacter anthropi sp. nov., isolated from human blood, and reclassification of Dyella yeojuensis Kim et al. 2006 as Luteibacter yeojuensis comb. nov. | Kampfer P, Lodders N, Falsen E | Int J Syst Evol Microbiol | 10.1099/ijs.0.009100-0 | 2009 | Blood/*microbiology, Child, Preschool, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Humans, Male, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Xanthomonadaceae/*classification/genetics/*isolation & purification | Pathogenicity |
| Phylogeny | 29637289 | Luteibacter pinisoli sp. nov., a casein degrading bacterium isolated from rhizospheric soil of Pinus koraiensis. | Akter S, Huq MA | Arch Microbiol | 10.1007/s00203-018-1515-1 | 2018 | Bacterial Typing Techniques, Base Composition, Caseins/*metabolism, DNA, Bacterial/genetics, Fatty Acids/chemistry/metabolism, Nucleic Acid Hybridization, Phylogeny, Pinus/growth & development/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Xanthomonadaceae/classification/genetics/*isolation & purification/*metabolism | Metabolism |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 16744 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23190) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23190 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29232 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 25653 | 28776041 | |
| 48139 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 25036) | https://www.ccug.se/strain?id=25036 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 86461 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID108245.1 | StrainInfo: A central database for resolving microbial strain identifiers |