Strain identifier
BacDive ID: 17462
Type strain: 
Species: Fulvimonas soli
Strain history: <- D. Janssens, LMG <- J. Mergaert
NCBI tax ID(s): 155197 (species)
version 8.1 (current version)
General
@ref: 5290
BacDive-ID: 17462
DSM-Number: 14263
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Fulvimonas soli DSM 14263 is a mesophilic, motile bacterium that was isolated from soil, after enrichment on actylated starch plastic.
NCBI tax id
- NCBI tax id: 155197
- Matching level: species
strain history
- @ref: 5290
- history: <- D. Janssens, LMG <- J. Mergaert
doi: 10.13145/bacdive17462.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Rhodanobacteraceae
- genus: Fulvimonas
- species: Fulvimonas soli
- full scientific name: Fulvimonas soli Mergaert et al. 2002
@ref: 5290
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Rhodanobacteraceae
genus: Fulvimonas
species: Fulvimonas soli
full scientific name: Fulvimonas soli Mergaert et al. 2002
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.44 | |
| 69480 | 99.987 | negative |
multimedia
- @ref: 5290
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_14263.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 5290
- name: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220a
- composition: Name: REACTIVATION WITH TRYPTONE SOYA BROTH (DSMZ Medium 220a) Composition: Casein peptone 17.0 g/l Agar 15.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
culture temp
- @ref: 5290
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 92 |
| 69480 | no | 99.996 |
Isolation, sampling and environmental information
isolation
- @ref: 5290
- sample type: soil, after enrichment on actylated starch plastic
- geographic location: Gent
- country: Belgium
- origin.country: BEL
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Laboratory | #Lab enrichment |
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 5290
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Fulvimonas soli partial 16S rRNA gene, type strain LMG 19981T
- accession: AJ311653
- length: 1497
- database: ena
- NCBI tax ID: 155197
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Fulvimonas soli DSM 14263 | GCA_003148905 | scaffold | ncbi | 155197 |
| 66792 | Fulvimonas soli LMG 19981 | GCA_006352285 | contig | ncbi | 155197 |
| 66792 | Fulvimonas soli strain DSM 14263 | 155197.3 | wgs | patric | 155197 |
| 66792 | Fulvimonas soli strain LMG 19981 | 155197.7 | wgs | patric | 155197 |
| 66792 | Fulvimonas soli DSM 14263 | 2754412938 | draft | img | 155197 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 92 | no |
| flagellated | no | 80.883 | no |
| gram-positive | no | 98.748 | no |
| anaerobic | no | 97.811 | no |
| halophile | no | 96.08 | no |
| spore-forming | no | 94.813 | no |
| glucose-util | yes | 87.387 | no |
| aerobic | yes | 85.052 | no |
| thermophile | no | 97.973 | no |
| motile | yes | 87.126 | no |
| glucose-ferment | no | 91.058 | no |
External links
@ref: 5290
culture collection no.: DSM 14263, LMG 19981
straininfo link
- @ref: 86458
- straininfo: 20327
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 12148641 | Fulvimonas soli gen. nov., sp. nov., a gamma-proteobacterium isolated from soil after enrichment on acetylated starch plastic. | Mergaert J, Cnockaert MC, Swings J | Int J Syst Evol Microbiol | 10.1099/00207713-52-4-1285 | 2002 | Acetylation, Bacterial Typing Techniques, Biodegradation, Environmental, Culture Media, DNA, Ribosomal/analysis, Fatty Acids/analysis, Gammaproteobacteria/chemistry/*classification/growth & development/*isolation & purification, Molecular Sequence Data, Phenotype, Phylogeny, Plastics/*metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Starch/*metabolism | Cultivation |
| Phylogeny | 16014492 | Dyella koreensis sp. nov., a beta-glucosidase-producing bacterium. | An DS, Im WT, Yang HC, Yang DC, Lee ST | Int J Syst Evol Microbiol | 10.1099/ijs.0.63695-0 | 2005 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plant Roots/*microbiology, Plants/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Xanthomonadaceae/*classification/*enzymology/genetics/physiology, beta-Glucosidase/*biosynthesis | Genetics |
| Phylogeny | 16280484 | Luteibacter rhizovicinus gen. nov., sp. nov., a yellow-pigmented gammaproteobacterium isolated from the rhizosphere of barley (Hordeum vulgare L.). | Johansen JE, Binnerup SJ, Kroer N, Molbak L | Int J Syst Evol Microbiol | 10.1099/ijs.0.63497-0 | 2005 | DNA, Bacterial/analysis, Gammaproteobacteria/chemistry/*classification/growth & development/isolation & purification, Hordeum/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, Random Amplified Polymorphic DNA Technique, Sequence Analysis, DNA, *Soil Microbiology, Symbiosis | Genetics |
| Phylogeny | 16902003 | Rhodanobacter spathiphylli sp. nov., a gammaproteobacterium isolated from the roots of Spathiphyllum plants grown in a compost-amended potting mix. | De Clercq D, Van Trappen S, Cleenwerck I, Ceustermans A, Swings J, Coosemans J, Ryckeboer J | Int J Syst Evol Microbiol | 10.1099/ijs.0.64131-0 | 2006 | Antibiosis, Araceae/growth & development/*microbiology, Base Composition, Catalase/analysis, Culture Media, DNA, Bacterial, Fatty Acids/analysis, Gammaproteobacteria/chemistry/*classification/isolation & purification/physiology, Hypocreales/physiology, Molecular Sequence Data, Oxidoreductases/analysis, Phylogeny, Plant Diseases/microbiology, Plant Roots/microbiology, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Soil, Soil Microbiology, Species Specificity | Cultivation |
| Phylogeny | 16957102 | Dyella yeojuensis sp. nov., isolated from greenhouse soil in Korea. | Kim BY, Weon HY, Lee KH, Seok SJ, Kwon SW, Go SJ, Stackebrandt E | Int J Syst Evol Microbiol | 10.1099/ijs.0.64175-0 | 2006 | Bacterial Typing Techniques, DNA, Bacterial/analysis, Korea, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, *Soil Microbiology, Xanthomonadaceae/classification/genetics/*isolation & purification | Genetics |
| Phylogeny | 19244422 | Dyella ginsengisoli sp. nov., isolated from soil of a ginseng field in South Korea. | Jung HM, Ten LN, Kim KH, An DS, Im WT, Lee ST | Int J Syst Evol Microbiol | 10.1099/ijs.0.64514-0 | 2009 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, *Panax/growth & development, Phenotype, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, Xanthomonadaceae/*classification/genetics/isolation & purification/physiology | Genetics |
| Phylogeny | 19671709 | Pseudofulvimonas gallinarii gen. nov., sp. nov., a new member of the family Xanthomonadaceae. | Kampfer P, Martin E, Lodders N, Langer S, Schumann P, Jackel U, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.014548-0 | 2009 | Animals, Base Sequence, DNA, Bacterial/genetics, Ducks/microbiology, Lipids/analysis, Molecular Sequence Data, Phylogeny, Quinones/metabolism, RNA, Bacterial/chemistry/genetics, RNA, Ribosomal, 16S/chemistry/genetics, Xanthomonadaceae/classification/*genetics/isolation & purification | Genetics |
| Phylogeny | 20305058 | Dyella thiooxydans sp. nov., a facultatively chemolithotrophic, thiosulfate-oxidizing bacterium isolated from rhizosphere soil of sunflower (Helianthus annuus L.). | Anandham R, Kwon SW, Indira Gandhi P, Kim SJ, Weon HY, Kim YS, Sa TM, Kim YK, Jee HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.022012-0 | 2010 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids, Helianthus/*microbiology, Molecular Sequence Data, Phenotype, Phospholipids, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Xanthomonadaceae/*classification/genetics/isolation & purification | Genetics |
| Phylogeny | 24860108 | Fulvimonas yonginensis sp. nov., isolated from greenhouse soil, and emended description of the genus Fulvimonas. | Ahn JH, Kim SJ, Weon HY, Hong SB, Seok SJ, Kwon SW | Int J Syst Evol Microbiol | 10.1099/ijs.0.064642-0 | 2014 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purification | Genetics |
| Phylogeny | 25724748 | Oleiagrimonas soli gen. nov., sp. nov., a genome-sequenced gammaproteobacterium isolated from an oilfield. | Fang T, Wang H, Huang Y, Zhou H, Dong P | Int J Syst Evol Microbiol | 10.1099/ijs.0.000158 | 2015 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Oil and Gas Fields/*microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, Polyamines/chemistry, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Ubiquinone/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purification | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 5290 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14263) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-14263 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 86458 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID20327.1 | StrainInfo: A central database for resolving microbial strain identifiers |