Strain identifier

BacDive ID: 17441

Type strain: Yes

Species: Azorhizobium doebereinerae

Strain Designation: UFLA1-100

Strain history: <- LMG <- F. Moreira, EMBRAPA-Agrobiologia Brazil

NCBI tax ID(s): 281091 (species)

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General

@ref: 7809

BacDive-ID: 17441

DSM-Number: 18977

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Azorhizobium doebereinerae UFLA1-100 is a mesophilic bacterium that was isolated from root nodules of Sesbania virgata Pers..

NCBI tax id

  • NCBI tax id: 281091
  • Matching level: species

strain history

  • @ref: 7809
  • history: <- LMG <- F. Moreira, EMBRAPA-Agrobiologia Brazil

doi: 10.13145/bacdive17441.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Xanthobacteraceae
  • genus: Azorhizobium
  • species: Azorhizobium doebereinerae
  • full scientific name: Azorhizobium doebereinerae Moreira et al. 2006

@ref: 7809

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Xanthobacteraceae

genus: Azorhizobium

species: Azorhizobium doebereinerae

full scientific name: Azorhizobium doebereinerae Moreira et al. 2006

strain designation: UFLA1-100

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 7809
  • name: TY MEDIUM (DSMZ Medium 1143)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1143
  • composition: Name: TY MEDIUM (DSMZ Medium 1143) Composition: Tryptone 5.0 g/l Yeast extract 3.0 g/l CaCl2 x 2 H2O 0.9 g/l Distilled water

culture temp

  • @ref: 7809
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 7809
  • sample type: root nodules of Sesbania virgata (Caz.) Pers.
  • host species: Sesbania virgata
  • geographic location: Rio de Janeiro, Seropédica
  • country: Brazil
  • origin.country: BRA
  • continent: Middle and South America

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root nodule

taxonmaps

  • @ref: 69479
  • File name: preview.99_2894.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_355;96_1529;97_1825;98_2238;99_2894&stattab=map
  • Last taxonomy: Azorhizobium doebereinerae subclade
  • 16S sequence: AF391130
  • Sequence Identity:
  • Total samples: 2790
  • soil counts: 586
  • aquatic counts: 1195
  • animal counts: 444
  • plant counts: 565

Safety information

risk assessment

  • @ref: 7809
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
7809Azorhizobium doebereinerae strain BR5401 16S ribosomal RNA gene, partial sequenceAF3911301435ena281091
7809Azorhizobium doebereinerae partial 16S rRNA gene, strain Br5401AJ003237226ena281091

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Azorhizobium doebereinerae UFLA1-100GCA_000473085scaffoldncbi1038858
66792Azorhizobium doebereinerae UFLA1-1001038858.13wgspatric1038858
66792Azorhizobium doebereinerae UFLA1-1002513237087draftimg1038858

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes78.557no
flagellatedno64.664no
gram-positiveno98.39no
anaerobicno96.189no
aerobicyes78.413no
halophileno92.669no
spore-formingno92.979no
glucose-utilyes89.693no
thermophileno97.2no
glucose-fermentno87.47no

External links

@ref: 7809

culture collection no.: DSM 18977, BR 5401, LMG 9993, SEMIA 6401

straininfo link

  • @ref: 86437
  • straininfo: 11627

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16564956Azorhizobium doebereinerae sp. Nov. Microsymbiont of Sesbania virgata (Caz.) Pers.Maria de Souza Moreira F, Cruz L, Miana de Faria S, Marsh T, Martinez-Romero E, de Oliveira Pedrosa F, Maria Pitard R, Peter W Young JSyst Appl Microbiol10.1016/j.syapm.2005.09.0042005Azorhizobium/classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Polymerase Chain Reaction, RNA, Ribosomal, 16S/chemistry, Sesbania/*microbiology, SymbiosisGenetics
Phylogeny22888185Azorhizobium oxalatiphilum sp. nov., and emended description of the genus Azorhizobium.Lang E, Schumann P, Adler S, Sproer C, Sahin NInt J Syst Evol Microbiol10.1099/ijs.0.045229-02012Azorhizobium/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rumex/*microbiology, Sequence Analysis, DNAGenetics

Reference

@idauthorscataloguedoi/urltitle
7809Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18977)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18977
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86437Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID11627.1StrainInfo: A central database for resolving microbial strain identifiers