Strain identifier

BacDive ID: 17438

Type strain: Yes

Species: Xanthobacter aminoxidans

Strain Designation: 14A

Strain history: CIP <- 2004, VKM <- N. V. Doronina, Russian Academ. Scien., Moscow, Russia: strain 14a

NCBI tax ID(s): 186280 (species)

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General

@ref: 5664

BacDive-ID: 17438

DSM-Number: 15009

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Xanthobacter aminoxidans 14A is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from activated sludge of a sewage purification system.

NCBI tax id

  • NCBI tax id: 186280
  • Matching level: species

strain history

@refhistory
5664<- Y. A. Trotsenko; 14A <- N. V. Doronina
116339CIP <- 2004, VKM <- N. V. Doronina, Russian Academ. Scien., Moscow, Russia: strain 14a

doi: 10.13145/bacdive17438.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Xanthobacteraceae
  • genus: Xanthobacter
  • species: Xanthobacter aminoxidans
  • full scientific name: Xanthobacter aminoxidans Doronina and Trotsenko 2003

@ref: 5664

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Xanthobacteraceae

genus: Xanthobacter

species: Xanthobacter aminoxidans

full scientific name: Xanthobacter aminoxidans Doronina and Trotsenko 2003

strain designation: 14A

type strain: yes

Morphology

cell morphology

  • @ref: 116339
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

colony morphology

  • @ref: 116339

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5664NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
34212MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
116339CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
5664positivegrowth30mesophilic
34212positivegrowth30mesophilic
116339positivegrowth15-37
116339nogrowth10psychrophilic
116339nogrowth41thermophilic
116339nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 116339
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
116339NaClpositivegrowth0 %
116339NaClnogrowth2 %
116339NaClnogrowth4 %
116339NaClnogrowth6 %
116339NaClnogrowth8 %
116339NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11633916947citrate+carbon source
1163394853esculin-hydrolysis
116339606565hippurate+hydrolysis
11633917632nitrate+reduction
11633916301nitrite-reduction
11633917632nitrate-respiration

antibiotic resistance

  • @ref: 116339
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 116339
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
11633915688acetoin-
11633917234glucose-

enzymes

@refvalueactivityec
116339oxidase+
116339beta-galactosidase-3.2.1.23
116339alcohol dehydrogenase-1.1.1.1
116339gelatinase-
116339amylase-
116339DNase-
116339caseinase-3.4.21.50
116339catalase+1.11.1.6
116339tween esterase-
116339gamma-glutamyltransferase+2.3.2.2
116339lecithinase-
116339lipase-
116339lysine decarboxylase-4.1.1.18
116339ornithine decarboxylase-4.1.1.17
116339phenylalanine ammonia-lyase-4.3.1.24
116339tryptophan deaminase-
116339urease+3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116339--++-+--+-+---------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
5664activated sludge of a sewage purification systemBaikal paper millRussiaRUSAsia
116339Environment, Activated sludgeBaykal lakeRussian FederationRUSEurope

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Waste
  • Cat3: #Activated sludge

taxonmaps

  • @ref: 69479
  • File name: preview.99_3372.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_355;96_1529;97_1825;98_2585;99_3372&stattab=map
  • Last taxonomy: Xanthobacter
  • 16S sequence: AF399969
  • Sequence Identity:
  • Total samples: 957
  • soil counts: 198
  • aquatic counts: 561
  • animal counts: 148
  • plant counts: 50

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
56641Risk group (German classification)
1163391Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Xanthobacter aminooxidans 16S ribosomal RNA gene, partial sequence
  • accession: AF399969
  • length: 1378
  • database: ena
  • NCBI tax ID: 186280

GC content

  • @ref: 5664
  • GC-content: 69.1

External links

@ref: 5664

culture collection no.: DSM 15009, ATCC BAA 299, VKM B-2254, CIP 108461

straininfo link

  • @ref: 86434
  • straininfo: 101067

literature

  • topic: Phylogeny
  • Pubmed-ID: 12656170
  • title: Reclassification of 'Blastobacter viscosus' 7d and 'Blastobacter aminooxidans' 14a as Xanthobacter viscosus sp. nov. and Xanthobacter aminoxidans sp. nov.
  • authors: Doronina NV, Trotsenko YA
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.02231-0
  • year: 2003
  • mesh: Base Sequence, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Species Specificity, Terminology as Topic, Xanthobacter/*classification/genetics/metabolism
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5664Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15009)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15009
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34212Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6086
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86434Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID101067.1StrainInfo: A central database for resolving microbial strain identifiers
116339Curators of the CIPCollection of Institut Pasteur (CIP 108461)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108461