Strain identifier
BacDive ID: 17362
Type strain: 
Species: Vibrio maritimus
Strain Designation: R-40493
Strain history: <- LMG <- I. Cleenwerck, Univ. Ghent, Belgium <- L. Chimetto, Universidade Estadual de Campinas, Brazil
NCBI tax ID(s): 990268 (species)
version 8.1 (current version)
General
@ref: 18170
BacDive-ID: 17362
DSM-Number: 26148
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile
description: Vibrio maritimus R-40493 is a mesophilic, motile bacterium that was isolated from mucus of appearantly healthy zoanthid Palythoa caribaeorum.
NCBI tax id
- NCBI tax id: 990268
- Matching level: species
strain history
- @ref: 18170
- history: <- LMG <- I. Cleenwerck, Univ. Ghent, Belgium <- L. Chimetto, Universidade Estadual de Campinas, Brazil
doi: 10.13145/bacdive17362.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio maritimus
- full scientific name: Vibrio maritimus Chimetto et al. 2011
@ref: 18170
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales, not validated
family: Vibrionaceae
genus: Vibrio
species: Vibrio maritimus
full scientific name: Vibrio maritimus Chimetto et al. 2011
strain designation: R-40493
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 96.642 | |
| 69480 | 99.981 | negative |
multimedia
- @ref: 18170
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_26148.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 18170
- name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514c
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 18170
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.957 |
Isolation, sampling and environmental information
isolation
- @ref: 18170
- sample type: mucus of appearantly healthy zoanthid Palythoa caribaeorum
- host species: Palythoa caribaeorum
- geographic location: São Paulo, São Sebastião Channel, Portinho Beach
- country: Brazil
- origin.country: BRA
- continent: Middle and South America
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Cnidaria (Corals)
Safety information
risk assessment
- @ref: 18170
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18170
- description: Vibrio maritimus strain R-40493 16S ribosomal RNA gene, partial sequence
- accession: GU929925
- length: 1504
- database: ena
- NCBI tax ID: 990268
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Vibrio maritimus CAIM 1455 | GCA_003263775 | contig | ncbi | 990268 |
| 66792 | Vibrio maritimus strain CAIM 1455 | 990268.12 | wgs | patric | 990268 |
GC content
- @ref: 18170
- GC-content: 46.3
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 91.46 | no |
| flagellated | yes | 90.405 | no |
| gram-positive | no | 98.502 | no |
| anaerobic | no | 96.639 | no |
| halophile | yes | 61.404 | no |
| spore-forming | no | 94.003 | no |
| glucose-util | yes | 91.702 | no |
| aerobic | yes | 86.508 | no |
| thermophile | no | 99.382 | yes |
| glucose-ferment | yes | 89.741 | no |
External links
@ref: 18170
culture collection no.: DSM 26148, CAIM 1455, LMG 25439
straininfo link
- @ref: 86363
- straininfo: 361317
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21296931 | Vibrio variabilis sp. nov. and Vibrio maritimus sp. nov., isolated from Palythoa caribaeorum. | Chimetto LA, Cleenwerck I, Moreira APB, Brocchi M, Willems A, De Vos P, Thompson FL | Int J Syst Evol Microbiol | 10.1099/ijs.0.026997-0 | 2011 | Animals, Anthozoa/*microbiology, Bacterial Proteins/genetics, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Vibrio/*classification/genetics/*isolation & purification | Genetics |
| Phylogeny | 31302725 | Genome Analysis of Two Novel Lytic Vibrio maritimus Phages Isolated from the Coastal Surface Seawater of Qingdao, China. | Han Y, Wang M, Liu Q, Liu Y, Wang Q, Duan X, Liu L, Jiang Y, Shao H, Guo C | Curr Microbiol | 10.1007/s00284-019-01736-2 | 2019 | China, DNA, Viral/genetics, Genome, Viral/*genetics, Host Specificity, Phylogeny, Seawater/*virology, Sequence Analysis, DNA, Siphoviridae/classification/*genetics/physiology/ultrastructure, Vibrio/*virology, Viral Proteins/genetics/metabolism | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 18170 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26148) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26148 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 86363 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID361317.1 | StrainInfo: A central database for resolving microbial strain identifiers |