Strain identifier
BacDive ID: 17333
Type strain: 
Species: Vibrio scophthalmi
Strain history: <- CAIM <- M. Cerdá-Cuellar, Univ. Barcelona
NCBI tax ID(s): 45658 (species)
version 8.1 (current version)
General
@ref: 7837
BacDive-ID: 17333
DSM-Number: 19140
keywords: 16S sequence, Bacteria, mesophilic
description: Vibrio scophthalmi DSM 19140 is a mesophilic bacterium that was isolated from Juvenile turbot .
NCBI tax id
- NCBI tax id: 45658
- Matching level: species
strain history
- @ref: 7837
- history: <- CAIM <- M. Cerdá-Cuellar, Univ. Barcelona
doi: 10.13145/bacdive17333.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Vibrio
- species: Vibrio scophthalmi
- full scientific name: Vibrio scophthalmi Cerdà-Cuéllar et al. 1997
@ref: 7837
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales, not validated
family: Vibrionaceae
genus: Vibrio
species: Vibrio scophthalmi
full scientific name: Vibrio scophthalmi Cerdà-Cuéllar et al. 1997
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 7837 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 41564 | Marine agar (MA) | yes | Distilled water make up to (1000.000 ml);Marine agar (55.100 g) |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 7837 | positive | growth | 28 | mesophilic |
| 41564 | positive | growth | 25 | mesophilic |
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | + | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | - | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | + | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7837 | + | - | + | - | - | - | - | + | + | - | + | - | + | + | + | - | - | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 7837
- sample type: Juvenile turbot (Scophthalmus maximus)
- host species: Scophthalmus maximus)
- geographic location: Northern Spain
- country: Spain
- origin.country: ESP
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Fishes
Safety information
risk assessment
- @ref: 7837
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7837
- description: Vibrio scophthalmi 16S rRNA gene
- accession: U46579
- length: 1497
- database: ena
- NCBI tax ID: 870967
External links
@ref: 7837
culture collection no.: DSM 19140, CAIM 75
straininfo link
- @ref: 86333
- straininfo: 12995
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 7837 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19140) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19140 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 41564 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/17206 | ||
| 68369 | Automatically annotated from API 20NE | |||
| 86333 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID12995.1 | StrainInfo: A central database for resolving microbial strain identifiers |