Strain identifier

BacDive ID: 17303

Type strain: Yes

Species: Vibrio tasmaniensis

Strain Designation: A 45, D39

Strain history: CIP <- 2004, CAIM <- LMG <- 2001, L. Verdonck, Ghent Univ., Belgium: strain VIB 836, Vibrio sp. <- J. Carson, Mount Pleasant Laboratories, Tasmania, Australia: strain D39

NCBI tax ID(s): 212663 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 6715

BacDive-ID: 17303

DSM-Number: 17182

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Vibrio tasmaniensis A 45 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from Salmo salar .

NCBI tax id

  • NCBI tax id: 212663
  • Matching level: species

strain history

@refhistory
6715<- CAIM <- LMG <- L. Verdonck, Univ. Ghent <-J. Carson, MPL Tasmania
123434CIP <- 2004, CAIM <- LMG <- 2001, L. Verdonck, Ghent Univ., Belgium: strain VIB 836, Vibrio sp. <- J. Carson, Mount Pleasant Laboratories, Tasmania, Australia: strain D39

doi: 10.13145/bacdive17303.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio tasmaniensis
  • full scientific name: Vibrio tasmaniensis Thompson et al. 2003

@ref: 6715

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio tasmaniensis

full scientific name: Vibrio tasmaniensis Thompson et al. 2003

strain designation: A 45, D39

type strain: yes

Morphology

cell morphology

  • @ref: 123434
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6715BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
36933Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
123434CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
6715positivegrowth28mesophilic
36933positivegrowth25mesophilic
123434positivegrowth5-30
123434nogrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 123434
  • oxygen tolerance: facultative anaerobe

halophily

@refsaltgrowthtested relationconcentration
123434NaClpositivegrowth2-6 %
123434NaClnogrowth0 %
123434NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan+energy source
6836917632nitrate+reduction
12343416947citrate-carbon source
1234344853esculin+hydrolysis
12343417234glucose+fermentation
12343417716lactose+fermentation
12343417632nitrate+reduction
12343416301nitrite-reduction
123434132112sodium thiosulfate-builds gas from

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleyes
12343435581indoleyes

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole+
12343415688acetoin-
12343417234glucose+

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
123434oxidase+
123434beta-galactosidase-3.2.1.23
123434alcohol dehydrogenase-1.1.1.1
123434gelatinase+/-
123434amylase+
123434caseinase-3.4.21.50
123434catalase+1.11.1.6
123434tween esterase+
123434gamma-glutamyltransferase+2.3.2.2
123434lecithinase+
123434lipase+
123434lysine decarboxylase-4.1.1.18
123434ornithine decarboxylase-4.1.1.17
123434phenylalanine ammonia-lyase+4.3.1.24
123434tryptophan deaminase-
123434urease-3.5.1.5

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
6715+++--+-++-++--+--++-+

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
6715Salmo salar Salmo salarTasmaniaAustraliaAUSAustralia and Oceania
123434Animal, Atlantic salmonTasmaniaAustraliaAUSAustralia and Oceania

isolation source categories

  • Cat1: #Host
  • Cat2: #Fishes
  • Cat3: #Salmonidae

taxonmaps

  • @ref: 69479
  • File name: preview.99_498.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_361;98_409;99_498&stattab=map
  • Last taxonomy: Vibrio
  • 16S sequence: AJ316192
  • Sequence Identity:
  • Total samples: 8493
  • soil counts: 235
  • aquatic counts: 6823
  • animal counts: 1389
  • plant counts: 46

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
67151Risk group (German classification)
1234342Risk group (French classification)

Sequence information

16S sequences

  • @ref: 6715
  • description: Vibrio sp. LMG 20012 16S rRNA gene, strain LMG 20012
  • accession: AJ316192
  • length: 1507
  • database: ena
  • NCBI tax ID: 212663

GC content

  • @ref: 6715
  • GC-content: 44.7

External links

@ref: 6715

culture collection no.: DSM 17182, CAIM 634, CCUG 48666, CIP 108272, LMG 20012

straininfo link

  • @ref: 86303
  • straininfo: 86808

Reference

@idauthorscataloguedoi/urltitle
6715Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17182)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17182
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
36933Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5876
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86303Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID86808.1StrainInfo: A central database for resolving microbial strain identifiers
123434Curators of the CIPCollection of Institut Pasteur (CIP 108272)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20108272