Strain identifier

BacDive ID: 17288

Type strain: Yes

Species: Vibrio furnissii

Strain Designation: 91 19-82, B3215

Strain history: CIP <- 1987, ATCC <- F. Hickman-Brenner: strain 91 19-82 <- CDC: strain B3215 <- W. Dewitt

NCBI tax ID(s): 675811 (strain), 29494 (species)

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General

@ref: 8214

BacDive-ID: 17288

DSM-Number: 19622

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Vibrio furnissii 91 19-82 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from faeces of an adult woman with gastroenteritis.

NCBI tax id

NCBI tax idMatching level
675811strain
29494species

strain history

@refhistory
8214<- CCUG; CCUG 37301 <- BCCM; LMG 7910 <- F. W. Hickman-Brenner; <- CDC, Atlanta; CDC B3215 <- W. Dewitt;
119496CIP <- 1987, ATCC <- F. Hickman-Brenner: strain 91 19-82 <- CDC: strain B3215 <- W. Dewitt

doi: 10.13145/bacdive17288.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Vibrionales
  • family: Vibrionaceae
  • genus: Vibrio
  • species: Vibrio furnissii
  • full scientific name: Vibrio furnissii Brenner et al. 1984

@ref: 8214

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio furnissii

full scientific name: Vibrio furnissii Brenner et al. 1984

strain designation: 91 19-82, B3215

type strain: yes

Morphology

cell morphology

  • @ref: 119496
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8214BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
8214TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
8214COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
38743MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119496CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
8214positivegrowth28mesophilic
38743positivegrowth25mesophilic
53590positivegrowth37mesophilic
8214positivegrowth30mesophilic
119496positivegrowth15-41
119496nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119496
  • oxygen tolerance: facultative anaerobe

halophily

  • @ref: 119496
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen+builds acid from28087
68371starch+builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
68369malate+assimilation25115
68369adipate-assimilation17128
68369decanoate+assimilation27689
68369gluconate+assimilation24265
68369maltose+assimilation17306
68369N-acetylglucosamine+assimilation59640
68369D-mannitol+assimilation16899
68369D-mannose+assimilation16024
68369L-arabinose+assimilation30849
68369D-glucose+assimilation17634
68369gelatin+hydrolysis5291
68369esculin-hydrolysis4853
68369urea-hydrolysis16199
68369arginine+hydrolysis29016
68369D-glucose+fermentation17634
68369tryptophan+energy source27897
68369nitrate+reduction17632
68368L-arabinose-fermentation30849
68368amygdalin-fermentation27613
68368melibiose-fermentation28053
68368sucrose-fermentation17992
68368L-rhamnose-fermentation62345
68368sorbitol-fermentation30911
68368myo-inositol-fermentation17268
68368D-mannitol-fermentation16899
68368D-glucose-fermentation17634
68368gelatin-hydrolysis5291
68368tryptophan-energy source27897
68368urea-hydrolysis16199
68368citrate-assimilation16947
68368ornithine-degradation18257
68368lysine-degradation25094
68368arginine+hydrolysis29016
119496citrate+carbon source16947
119496esculin-hydrolysis4853
119496glucose+fermentation17234
119496lactose-fermentation17716
119496nitrate+reduction17632
119496nitrite-reduction16301
119496sodium thiosulfate-builds gas from132112
119496nitrate+respiration17632

antibiotic resistance

  • @ref: 119496
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleyes
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno
11949635581indoleyes

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836935581indole+
6836815688acetoin-
6836835581indole-
11949615688acetoin-
11949617234glucose+

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase+3.5.3.6
68368cytochrome oxidase+1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
119496oxidase+
119496beta-galactosidase+3.2.1.23
119496alcohol dehydrogenase-1.1.1.1
119496gelatinase+
119496amylase+
119496DNase+
119496caseinase+3.4.21.50
119496catalase+1.11.1.6
119496tween esterase+
119496gamma-glutamyltransferase-2.3.2.2
119496lecithinase+
119496lipase+
119496lysine decarboxylase-4.1.1.18
119496ornithine decarboxylase-4.1.1.17
119496phenylalanine ammonia-lyase-4.3.1.24
119496protease+
119496tryptophan deaminase-
119496urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119496-+---+----+----+-+--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
8214++------------------+

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
8214++++--++++++++++-++-+

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119496+--++--+/--++++-+--+---+-----+--++---++-------+-+--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119496+++++--+-++--+---+-++-----+----+-+---------------++--+-+---++-++++--++--++-++--+++-+--+-+++++++-+--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
8214faeces of an adult woman with gastroenteritis
53590Human feces
119496Human, FecesJapanJPNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_418.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_14;96_71;97_312;98_347;99_418&stattab=map
  • Last taxonomy: Vibrio
  • 16S sequence: X74704
  • Sequence Identity:
  • Total samples: 3818
  • soil counts: 168
  • aquatic counts: 1720
  • animal counts: 1806
  • plant counts: 124

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
82142Risk group (German classification)
1194962Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218V.furnissii (ATCC 35016 T) 16S rRNA geneX763361546ena29494
8214V.furnisii (ATCC 35016T) gene for 16S ribosomal RNAX747041436ena29494

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Vibrio furnissii NCTC13120GCA_900460225contigncbi29494
66792Vibrio furnissii CIP 102972GCA_000176175contigncbi675811
66792Vibrio furnissii CIP 102972675811.4wgspatric675811
66792Vibrio furnissii strain FDAARGOS_77729494.12completepatric29494
66792Vibrio furnissii strain NCTC1312029494.10wgspatric29494
66792Vibrio furnissii sv. II CIP 102972647000337draftimg675811

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.772no
anaerobicno97.01no
halophileno56.334no
spore-formingno94.813no
glucose-utilyes92.704yes
motileyes92.592no
flagellatedyes88.005no
aerobicyes83.102no
thermophileno99.403yes
glucose-fermentyes88.985no

External links

@ref: 8214

culture collection no.: NCTC 13120, CIP 102972, KCTC 2731, DSM 19622, ATCC 35016, CCUG 37301, CDC B3215, LMG 7910, CCUG 15269

straininfo link

  • @ref: 86288
  • straininfo: 13868

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity6630464Vibrio furnissii (formerly aerogenic biogroup of Vibrio fluvialis), a new species isolated from human feces and the environment.Brenner DJ, Hickman-Brenner FW, Lee JV, Steigerwalt AG, Fanning GR, Hollis DG, Farmer JJ 3rd, Weaver RE, Joseph SW, Seidler RJJ Clin Microbiol10.1128/jcm.18.4.816-824.19831983Acute Disease, Animals, Anti-Bacterial Agents/pharmacology, Cattle, Feces/*microbiology, Fishes/microbiology, Gastroenteritis/microbiology, Humans, Microbial Sensitivity Tests, Milk/microbiology, Serotyping, Sewage/analysis, Vibrio/classification/*isolation & purificationPhylogeny
Genetics17921268Genomic and biochemical studies demonstrating the absence of an alkane-producing phenotype in Vibrio furnissii M1.Wackett LP, Frias JA, Seffernick JL, Sukovich DJ, Cameron SMAppl Environ Microbiol10.1128/AEM.01785-072007Alkanes/*metabolism, DNA, Bacterial/chemistry/genetics, Electrophoresis, Gel, Pulsed-Field, Gene Order, Genome, Bacterial, Genomics/methods, Molecular Sequence Data, Open Reading Frames/genetics, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vibrio/classification/*genetics/*metabolismPhylogeny
Phylogeny18599703Vibrio porteresiae sp. nov., a diazotrophic bacterium isolated from a mangrove-associated wild rice (Porteresia coarctata Tateoka).Rameshkumar N, Fukui Y, Sawabe T, Nair SInt J Syst Evol Microbiol10.1099/ijs.0.65604-02008Molecular Sequence Data, *Nitrogen Fixation, Oryza/*microbiology, Oxidoreductases/genetics, Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity, Verbenaceae, Vibrio/*classification/genetics/isolation & purificationGenetics
Metabolism21467648Identification of genes, desR and desA, required for utilization of desferrioxamine B as a xenosiderophore in Vibrio furnissii.Tanabe T, Funahashi T, Miyamoto K, Tsujibo H, Yamamoto SBiol Pharm Bull10.1248/bpb.34.5702011Bacterial Outer Membrane Proteins/*genetics/metabolism, Bacterial Proteins/genetics/metabolism, Base Sequence, Biological Transport, Deferoxamine/*metabolism, Ferric Compounds/*metabolism, Gene Deletion, *Gene Expression Regulation, Bacterial, *Genes, Bacterial, Iron/metabolism/pharmacology, Promoter Regions, Genetic, RNA, Messenger/analysis, Receptors, Cell Surface/*genetics/metabolism, Repressor Proteins/genetics/metabolism, Sequence Deletion, Siderophores/*metabolism, Trans-Activators/*genetics/metabolism, Transcriptional Activation, Vibrio/*genetics/metabolism
Phylogeny36269578Vibrio ostreae sp. nov., a novel gut bacterium isolated from a Yellow Sea oyster.Muhammad N, Nguyen TTH, Lee YJ, Ko J, Avila F, Kim SGInt J Syst Evol Microbiol10.1099/ijsem.0.0055862022Animals, Bacterial Typing Techniques, Base Composition, Cardiolipins, Catalase/genetics, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleotides, *Ostreidae/microbiology, Phosphatidylethanolamines, Phospholipids/chemistry, Phylogeny, Quinones, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, *Vibrio/genetics/isolation & purificationTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8214Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19622)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19622
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38743Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14717
53590Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 37301)https://www.ccug.se/strain?id=37301
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
68369Automatically annotated from API 20NE
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
86288Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID13868.1StrainInfo: A central database for resolving microbial strain identifiers
119496Curators of the CIPCollection of Institut Pasteur (CIP 102972)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20102972