Strain identifier

BacDive ID: 172627

Type strain: No

Species: Escherichia coli

Strain Designation: AL05

Strain history: CIP <- 2005, C. Le Bouguénec, Inst. Pasteur, Paris, France: strain AL05

NCBI tax ID(s): 562 (species)

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General

@ref: 118660

BacDive-ID: 172627

keywords: Bacteria, Gram-negative, rod-shaped

description: Escherichia coli AL05 is a Gram-negative, rod-shaped bacterium that was isolated from Human, Pyelonephritis.

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 118660
  • history: CIP <- 2005, C. Le Bouguénec, Inst. Pasteur, Paris, France: strain AL05

doi: 10.13145/bacdive172627.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 118660

domain: Bacteria

phylum: Pseudomonadota

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

strain designation: AL05

type strain: no

Morphology

cell morphology

  • @ref: 118660
  • gram stain: negative
  • cell shape: rod-shaped

Culture and growth conditions

culture medium

  • @ref: 118660
  • name: CIP Medium 368
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=368

culture temp

  • @ref: 118660
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11866016947citrate-carbon source
11866017234glucose+fermentation
11866017716lactose+fermentation
11866017632nitrate+reduction
11866016301nitrite+reduction
118660132112sodium thiosulfate-builds gas from
6837117754glycerol+builds acid from
6837117113erythritol-builds acid from
6837130849L-arabinose+builds acid from
6837116988D-ribose+builds acid from
6837165327D-xylose+builds acid from
6837165328L-xylose-builds acid from
6837115963ribitol-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837112936D-galactose+builds acid from
6837117634D-glucose+builds acid from
6837115824D-fructose+builds acid from
6837116024D-mannose+builds acid from
6837117266L-sorbose+builds acid from
6837162345L-rhamnose+builds acid from
6837116813galactitol+builds acid from
6837117268myo-inositol-builds acid from
6837116899D-mannitol+builds acid from
6837117924D-sorbitol+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837159640N-acetylglucosamine+builds acid from
6837127613amygdalin-builds acid from
6837117057cellobiose-builds acid from
6837117306maltose+builds acid from
6837117716lactose+builds acid from
6837128053melibiose+builds acid from
6837117992sucrose-builds acid from
6837127082trehalose+builds acid from
6837115443inulin-builds acid from
683716731melezitose-builds acid from
6837116634raffinose-builds acid from
6837128017starch-builds acid from
6837128087glycogen-builds acid from
6837117151xylitol-builds acid from
6837128066gentiobiose-builds acid from
6837132528turanose-builds acid from
6837162318D-lyxose-builds acid from
6837116443D-tagatose-builds acid from
6837128847D-fucose-builds acid from
6837118287L-fucose+builds acid from
6837118333D-arabitol-builds acid from
6837118403L-arabitol-builds acid from
6837124265gluconate+builds acid from

metabolite production

  • @ref: 118660
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

enzymes

@refvalueactivityec
118660oxidase-
118660beta-galactosidase+3.2.1.23
118660alcohol dehydrogenase-1.1.1.1
118660lysine decarboxylase+4.1.1.18
118660ornithine decarboxylase+4.1.1.17
118660tryptophan deaminase-
118660urease-3.5.1.5

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
118660+-+/-+++---+++++++-++--+-+/-+/-+/--+++-+-----------+--++/-+/-

Isolation, sampling and environmental information

isolation

  • @ref: 118660
  • sample type: Human, Pyelonephritis
  • geographic location: Paris
  • country: France
  • origin.country: FRA
  • continent: Europe
  • isolation date: 1988

Safety information

risk assessment

  • @ref: 118660
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 118660

culture collection no.: CRBIP14.32

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
68371Automatically annotated from API 50CH acid
118660Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CRBIP14.32Collection of Institut Pasteur (CRBIP14.32)