Strain identifier

BacDive ID: 172617

Type strain: No

Species: Escherichia coli

Strain Designation: IH11128

Strain history: CIP <- 2005, C. Le Bouguénec, Inst. Pasteur, Paris, France: strain IH11128

NCBI tax ID(s): 562 (species)

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General

@ref: 118650

BacDive-ID: 172617

keywords: Bacteria, Gram-negative, rod-shaped

description: Escherichia coli IH11128 is a Gram-negative, rod-shaped bacterium that was isolated from Human, .

NCBI tax id

  • NCBI tax id: 562
  • Matching level: species

strain history

  • @ref: 118650
  • history: CIP <- 2005, C. Le Bouguénec, Inst. Pasteur, Paris, France: strain IH11128

doi: 10.13145/bacdive172617.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Escherichia
  • species: Escherichia coli
  • full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacillus coli

@ref: 118650

domain: Bacteria

phylum: Pseudomonadota

class: Gammaproteobacteria

order: Enterobacterales

family: Enterobacteriaceae

genus: Escherichia

species: Escherichia coli

strain designation: IH11128

type strain: no

Morphology

cell morphology

  • @ref: 118650
  • gram stain: negative
  • cell shape: rod-shaped

Culture and growth conditions

culture medium

  • @ref: 118650
  • name: CIP Medium 368
  • growth: yes
  • link: https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=368

culture temp

  • @ref: 118650
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate-reduction
6836828053melibiose-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836817634D-glucose-fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
11865017108D-arabinose-degradation
11865015824D-fructose-degradation
11865017634D-glucose-degradation
11865016024D-mannose-degradation
11865065327D-xylose-degradation
11865017057cellobiose-degradation
11865017716lactose-degradation
11865017306maltose-degradation
11865017814salicin-degradation
11865017992sucrose-degradation
11865016947citrate-carbon source
11865017234glucose+fermentation
11865017716lactose+fermentation
11865017632nitrate+reduction
11865016301nitrite+reduction
118650132112sodium thiosulfate-builds gas from
6837117754glycerol+builds acid from
6837117113erythritol-builds acid from
6837117108D-arabinose-builds acid from
6837130849L-arabinose+builds acid from
6837116988D-ribose+builds acid from
6837165327D-xylose+builds acid from
6837165328L-xylose-builds acid from
6837115963ribitol-builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837112936D-galactose+builds acid from
6837117634D-glucose+builds acid from
6837115824D-fructose+builds acid from
6837116024D-mannose+builds acid from
6837117266L-sorbose+builds acid from
6837162345L-rhamnose+builds acid from
6837116813galactitol+builds acid from
6837117268myo-inositol-builds acid from
6837116899D-mannitol+builds acid from
6837117924D-sorbitol+builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837159640N-acetylglucosamine+builds acid from
6837127613amygdalin-builds acid from
6837117057cellobiose-builds acid from
6837117306maltose+builds acid from
6837117716lactose+builds acid from
6837128053melibiose+builds acid from
6837117992sucrose+builds acid from
6837127082trehalose+builds acid from
6837115443inulin-builds acid from
683716731melezitose-builds acid from
6837116634raffinose+builds acid from
6837128017starch-builds acid from
6837128087glycogen-builds acid from
6837117151xylitol-builds acid from
6837128066gentiobiose-builds acid from
6837132528turanose-builds acid from
6837162318D-lyxose-builds acid from
6837116443D-tagatose+builds acid from
6837128847D-fucose-builds acid from
6837118287L-fucose+builds acid from
6837118333D-arabitol-builds acid from
6837118403L-arabitol-builds acid from
6837124265gluconate+builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371Potassium 5-ketogluconate-builds acid from
683764853esculin-hydrolysis
6837618333D-arabitol-builds acid from
6837665327D-xylose-builds acid from
6837662345L-rhamnose-builds acid from
68376320061methyl alpha-D-glucopyranoside-builds acid from
6837616988D-ribose-builds acid from
6837629042glucose 1-phosphate-builds acid from
6837616443D-tagatose-builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteno
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno
11865035581indoleyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68376alpha-mannosidase-3.2.1.24
68376beta-glucosidase-3.2.1.21
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
118650oxidase-
118650beta-galactosidase+3.2.1.23
118650alcohol dehydrogenase-1.1.1.1
118650lysine decarboxylase+4.1.1.18
118650ornithine decarboxylase-4.1.1.17
118650tryptophan deaminase-
118650urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase-3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase-
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118650--------------------

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUINOSorRHASACMELNO2N2
118650-------------------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
118650+--+++---+++++++-++--+-+/-+/-+/--+++++--+------+-+--+--

API LIST

@refDIMESCalpha MANDARLXYLRHAMDGRIBG1PTAG
118650----------

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
118650---------------------------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

  • @ref: 118650
  • sample type: Human, (Urine with pyelonephritis)

Safety information

risk assessment

  • @ref: 118650
  • biosafety level: 2
  • biosafety level comment: Risk group (French classification)

External links

@ref: 118650

culture collection no.: CRBIP14.21

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68376Automatically annotated from API LIST
68382Automatically annotated from API zym
118650Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CRBIP14.21Collection of Institut Pasteur (CRBIP14.21)