Strain identifier
BacDive ID: 172456
Type strain: 
Species: Escherichia coli
Strain Designation: UPEC_105.169.0011
Strain history: CIP <- 2007, JM. Ghigo, Institut Pasteur, Paris, France: strain UPEC_105.169.0011 <- C. Forestier
NCBI tax ID(s): 562 (species)
General
@ref: 118488
BacDive-ID: 172456
keywords: Bacteria, Gram-negative, rod-shaped
description: Escherichia coli UPEC_105.169.0011 is a Gram-negative, rod-shaped bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 562
- Matching level: species
strain history
- @ref: 118488
- history: CIP <- 2007, JM. Ghigo, Institut Pasteur, Paris, France: strain UPEC_105.169.0011 <- C. Forestier
doi: 10.13145/bacdive172456.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Escherichia
- species: Escherichia coli
- full scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacillus coli
@ref: 118488
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Escherichia
species: Escherichia coli
strain designation: UPEC_105.169.0011
type strain: no
Morphology
cell morphology
- @ref: 118488
- gram stain: negative
- cell shape: rod-shaped
Culture and growth conditions
culture medium
| @ref | name | growth | link |
|---|---|---|---|
| 118488 | Luria-Bertani Medium | yes | |
| 118488 | CIP Medium 368 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=368 |
culture temp
- @ref: 118488
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68368 | 17632 | nitrate | - | reduction |
| 68368 | 28053 | melibiose | - | fermentation |
| 68368 | 17992 | sucrose | - | fermentation |
| 68368 | 62345 | L-rhamnose | - | fermentation |
| 68368 | 30911 | sorbitol | - | fermentation |
| 68368 | 17268 | myo-inositol | - | fermentation |
| 68368 | 17634 | D-glucose | - | fermentation |
| 68368 | 5291 | gelatin | - | hydrolysis |
| 68368 | 27897 | tryptophan | - | energy source |
| 68368 | 16199 | urea | - | hydrolysis |
| 68368 | 16947 | citrate | - | assimilation |
| 68368 | 18257 | ornithine | - | degradation |
| 68368 | 25094 | lysine | - | degradation |
| 68368 | 29016 | arginine | - | hydrolysis |
metabolite production
| @ref | Chebi-ID | metabolite | production |
|---|---|---|---|
| 68368 | 17997 | dinitrogen | no |
| 68368 | 16301 | nitrite | no |
| 68368 | 15688 | acetoin | no |
| 68368 | 35581 | indole | no |
| 68368 | 16136 | hydrogen sulfide | no |
metabolite tests
| @ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
|---|---|---|---|---|
| 68368 | 15688 | acetoin | - | |
| 68368 | 35581 | indole | - |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68368 | gelatinase | - | |
| 68368 | tryptophan deaminase | - | 4.1.99.1 |
| 68368 | urease | - | 3.5.1.5 |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 |
| 68368 | lysine decarboxylase | - | 4.1.1.18 |
| 68368 | arginine dihydrolase | - | 3.5.3.6 |
| 68368 | beta-galactosidase | - | 3.2.1.23 |
API 20E
| @ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | INO | Sor | RHA | SAC | MEL | NO2 | N2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 118488 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Safety information
risk assessment
- @ref: 118488
- biosafety level: 2
- biosafety level comment: Risk group (French classification)
External links
@ref: 118488
culture collection no.: CRBIP19.225
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 68368 | Automatically annotated from API 20E | |||
| 118488 | Curators of the CIP | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CRBIP19.225 | Collection of Institut Pasteur (CRBIP19.225) |