Archive BacDiveID:10.13145/bacdive1724.20230509.8.1

Strain identifier

BacDive ID: 1724

Type strain:

Species: Bifidobacterium ruminantium

Strain Designation: Ru679

Strain history: <- B. Biavati, Ru679

NCBI tax ID(s): 78346 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 2695

BacDive-ID: 1724

DSM-Number: 6490

keywords: Bacteria, anaerobe, mesophilic

description: Bifidobacterium ruminantium Ru679 is an anaerobe, mesophilic bacterium that was isolated from rumen of cattle.

NCBI tax id

NCBI tax id: 78346
Matching level: species

strain history

@ref: 2695
history: <- B. Biavati, Ru679

doi: 10.13145/bacdive1724.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Bifidobacteriales
family: Bifidobacteriaceae
genus: Bifidobacterium
species: Bifidobacterium ruminantium
full scientific name: Bifidobacterium ruminantium Biavati and Mattarelli 1991

@ref: 2695

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Bifidobacterium

species: Bifidobacterium ruminantium

full scientific name: Bifidobacterium ruminantium Biavati and Mattarelli 1991 emend. Nouioui et al. 2018

strain designation: Ru679

type strain: no

Culture and growth conditions

culture medium

@ref: 2695
name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)
growth: yes
link: https://mediadive.dsmz.de/medium/58
composition: Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water

culture temp

@ref: 2695
growth: positive
type: growth
temperature: 37
range: mesophilic

Physiology and metabolism

oxygen tolerance

@ref: 2695
oxygen tolerance: anaerobe

murein

@ref: 2695
murein short key: A11.21
type: A3alpha L-Lys(L-Orn)-L-Ala(L-Ser)-L-Ala₂

Isolation, sampling and environmental information

isolation

@ref: 2695
sample type: rumen of cattle

isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen

Safety information

risk assessment

@ref: 2695
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

GC content

@ref: 2695
GC-content: 57.0
method: thermal denaturation, midpoint method (Tm)

External links

@ref: 2695

culture collection no.: DSM 6490

straininfo link

@ref: 71371
straininfo: 48215

Reference

@id	authors	catalogue	doi/url	title
2695	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6490)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-6490
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
71371	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID48215.1	StrainInfo: A central database for resolving microbial strain identifiers