Strain identifier
BacDive ID: 17214
Type strain: 
Species: Catenococcus thiocycli
Strain Designation: TG5-3
Strain history: <- D. Y. Sorokin; TG5-3 <- D. Y. Sorokin {1990}
NCBI tax ID(s): 94140 (species)
General
@ref: 3498
BacDive-ID: 17214
DSM-Number: 9165
keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic
description: Catenococcus thiocycli TG5-3 is a facultative anaerobe, mesophilic bacterium that was isolated from marine water, sulfidic hydrothermal area.
NCBI tax id
- NCBI tax id: 94140
- Matching level: species
strain history
- @ref: 3498
- history: <- D. Y. Sorokin; TG5-3 <- D. Y. Sorokin {1990}
doi: 10.13145/bacdive17214.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Vibrionales
- family: Vibrionaceae
- genus: Catenococcus
- species: Catenococcus thiocycli
- full scientific name: Catenococcus thiocycli corrig. Sorokin 1994
synonyms
- @ref: 20215
- synonym: Catenococcus thiocyclus
@ref: 3498
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Vibrionales, not validated
family: Vibrionaceae
genus: Catenococcus
species: Catenococcus thiocycli
full scientific name: Catenococcus thiocycli Sorokin 1994
strain designation: TG5-3
type strain: yes
Culture and growth conditions
culture medium
- @ref: 3498
- name: CATENOCOCCUS MEDIUM (DSMZ Medium 644)
- growth: yes
- link: https://mediadive.dsmz.de/medium/644
- composition: Name: CATENOCOCCUS MEDIUM (DSMZ Medium 644) Composition: Agar 15.0 g/l NaCl 15.0 g/l K2HPO4 1.0 g/l D-Glucose 1.0 g/l MgSO4 x 7 H2O 1.0 g/l Na-acetate 0.82 g/l NH4Cl 0.5 g/l Yeast extract 0.2 g/l KH2PO4 0.15 g/l CaCl2 x 2 H2O 0.1 g/l EDTA 0.005 g/l FeSO4 x 7 H2O 0.0022 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l H3BO3 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l NiCl2 x 6 H2O 3e-05 g/l Na2MoO4 x 2 H2O 3e-05 g/l CuCl2 x 2 H2O 3e-05 g/l Distilled water
culture temp
- @ref: 3498
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 3498
- oxygen tolerance: facultative anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 3498
- sample type: marine water, sulfidic hydrothermal area
- geographic location: Matupy harbour
- country: Papua New Guinea
- origin.country: PNG
- continent: Australia and Oceania
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Condition | #Sulfuric | |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 3498
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 3498
- description: Catenococcus thiocycli partial 16S rRNA gene, type strain DSM 9165T
- accession: HE582778
- length: 1539
- database: ena
- NCBI tax ID: 94140
GC content
- @ref: 3498
- GC-content: 49.8
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 3498
culture collection no.: DSM 9165, ATCC 51228, LMD 92.12
straininfo link
- @ref: 86213
- straininfo: 45279
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3498 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9165) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9165 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 86213 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45279.1 | StrainInfo: A central database for resolving microbial strain identifiers |