Strain identifier
BacDive ID: 17198
Type strain: 
Species: Sporomusa termitida
Strain Designation: JSN-2
Strain history: <- J. A. Breznak, Michigan State University, Center for Microbial Ecology, E. Lansing, USA; JSN-2 <- J. A. Breznak {1985}
NCBI tax ID(s): 2377 (species)
version 8.1 (current version)
General
@ref: 1592
BacDive-ID: 17198
DSM-Number: 4440
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile
description: Sporomusa termitida JSN-2 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from intestinal contents of termite Nasutitermes nigriceps.
NCBI tax id
- NCBI tax id: 2377
- Matching level: species
strain history
- @ref: 1592
- history: <- J. A. Breznak, Michigan State University, Center for Microbial Ecology, E. Lansing, USA; JSN-2 <- J. A. Breznak {1985}
doi: 10.13145/bacdive17198.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Selenomonadales
- family: Sporomusaceae
- genus: Sporomusa
- species: Sporomusa termitida
- full scientific name: Sporomusa termitida Breznak et al. 1990
@ref: 1592
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Selenomonadales
family: Sporomusaceae
genus: Sporomusa
species: Sporomusa termitida
full scientific name: Sporomusa termitida Breznak et al. 1990
strain designation: JSN-2
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.685 | |
| 69480 | 99.578 | negative |
Culture and growth conditions
culture medium
- @ref: 1592
- name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c)
- growth: yes
- link: https://mediadive.dsmz.de/medium/311c
- composition: Name: SPOROMUSA ACIDOVORANS MEDIUM (DSMZ Medium 311c; with strain-specific modifications) Composition: NaCl 2.23881 g/l Yeast extract 1.99005 g/l Casitone 1.99005 g/l Betaine 1.34328 g/l Na2CO3 0.995025 g/l NH4Cl 0.497512 g/l MgSO4 x 7 H2O 0.497512 g/l K2HPO4 0.348259 g/l CaCl2 x 2 H2O 0.248756 g/l KH2PO4 0.228856 g/l DL-Dithiothreitol 0.149254 g/l HCl 0.00248756 g/l FeSO4 x 7 H2O 0.00199005 g/l FeCl2 x 4 H2O 0.00149254 g/l NaOH 0.000497512 g/l Sodium resazurin 0.000497512 g/l CoCl2 x 6 H2O 0.000189055 g/l MnCl2 x 4 H2O 9.95025e-05 g/l Pyridoxine hydrochloride 9.95025e-05 g/l ZnCl2 6.96517e-05 g/l p-Aminobenzoic acid 4.97512e-05 g/l (DL)-alpha-Lipoic acid 4.97512e-05 g/l Nicotinic acid 4.97512e-05 g/l Riboflavin 4.97512e-05 g/l Thiamine HCl 4.97512e-05 g/l Calcium D-(+)-pantothenate 4.97512e-05 g/l Na2MoO4 x 2 H2O 3.58209e-05 g/l NiCl2 x 6 H2O 2.38806e-05 g/l Folic acid 1.99005e-05 g/l Biotin 1.99005e-05 g/l H3BO3 5.97015e-06 g/l Na2WO4 x 2 H2O 3.9801e-06 g/l Na2SeO3 x 5 H2O 2.98507e-06 g/l CuCl2 x 2 H2O 1.99005e-06 g/l Vitamin B12 9.95025e-07 g/l Distilled water
culture temp
- @ref: 1592
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 1592 | anaerobe | |
| 69480 | anaerobe | 99.999 |
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 99.447
Isolation, sampling and environmental information
isolation
- @ref: 1592
- sample type: intestinal contents of termite Nasutitermes nigriceps
- host species: Nasutitermes nigriceps
- country: Jamaica
- origin.country: JAM
- continent: Middle and South America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Arthropoda | #Insecta |
| #Host Body-Site | #Gastrointestinal tract |
Safety information
risk assessment
- @ref: 1592
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 1592 | Sporomusa termitida partial 16S rRNA gene, type strain DSM 4440T, clone 1 | HE582744 | 1642 | ena | 2377 |
| 1592 | Sporomusa termitida partial 16S rRNA gene, type strain DSM 4440T, clone 3 | HE582746 | 1541 | ena | 2377 |
| 1592 | Sporomusa termitida partial 16S rRNA gene, type strain DSM 4440T, clone 4 | HE582747 | 1642 | ena | 2377 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Sporomusa termitida DSM 4440 | GCA_007641255 | complete | ncbi | 2377 |
| 66792 | Sporomusa termitida strain DSM 4440 | 2377.3 | complete | patric | 2377 |
GC content
- @ref: 1592
- GC-content: 48.6
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 75 | no |
| motile | yes | 86.161 | no |
| flagellated | no | 51.634 | no |
| gram-positive | no | 94.755 | no |
| anaerobic | yes | 99.031 | yes |
| aerobic | no | 96.922 | yes |
| halophile | no | 96.213 | no |
| spore-forming | yes | 82.021 | no |
| thermophile | no | 96.945 | yes |
| glucose-util | yes | 67.932 | no |
| glucose-ferment | no | 70.593 | no |
External links
@ref: 1592
culture collection no.: DSM 4440, ATCC 49683
straininfo link
- @ref: 86197
- straininfo: 46889
literature
- topic: Genetics
- Pubmed-ID: 32165380
- title: Complete Genome Sequence of Sporomusa termitida DSM 4440(T).
- authors: Poehlein A, Hollensteiner J, Dreyer A, Gavrilova I, Daniel R
- journal: Microbiol Resour Announc
- DOI: 10.1128/MRA.00046-20
- year: 2020
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1592 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4440) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4440 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 86197 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID46889.1 | StrainInfo: A central database for resolving microbial strain identifiers |