Strain identifier

BacDive ID: 17155

Type strain: Yes

Species: Selenomonas ruminantium subsp. lactilytica

Strain Designation: PC 18

Strain history: ATCC 19205 <-- W. E. C. Moore <-- K. Pittman <-- M. Byrant and L. Burkey PC18.

NCBI tax ID(s): 114197 (subspecies)

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General

@ref: 1154

BacDive-ID: 17155

DSM-Number: 2872

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, Gram-negative

description: Selenomonas ruminantium subsp. lactilytica PC 18 is an anaerobe, Gram-negative bacterium that was isolated from bovine rumen.

NCBI tax id

  • NCBI tax id: 114197
  • Matching level: subspecies

strain history

@refhistory
1154<- P. Harborth <- M.P. Bryant, PC 18
67770ATCC 19205 <-- W. E. C. Moore <-- K. Pittman <-- M. Byrant and L. Burkey PC18.

doi: 10.13145/bacdive17155.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Negativicutes
  • order: Selenomonadales
  • family: Selenomonadaceae
  • genus: Selenomonas
  • species: Selenomonas ruminantium subsp. lactilytica
  • full scientific name: Selenomonas ruminantium subsp. lactilytica Bryant 1956 (Approved Lists 1980)

@ref: 1154

domain: Bacteria

phylum: Firmicutes

class: Negativicutes

order: Selenomonadales

family: Selenomonadaceae

genus: Selenomonas

species: Selenomonas ruminantium subsp. lactilytica

full scientific name: Selenomonas ruminantium subsp. lactilytica Bryant 1956

strain designation: PC 18

type strain: yes

Morphology

colony morphology

  • @ref: 1154
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1154TREPONEMA MEDIUM (DSMZ Medium 159)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium159.pdf
1154SELENOMONAS RUMINANTIUM MEDIUM (DSMZ Medium 181)yeshttps://mediadive.dsmz.de/medium/181Name: SELENOMONAS RUMINANTIUM MEDIUM (DSMZ Medium 181) Composition: Trypticase 5.0 g/l Na-acetate 4.0 g/l Na2CO3 4.0 g/l Yeast extract 2.0 g/l KH2PO4 1.0 g/l Glucose 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Resazurin 0.001 g/l n-Valeric acid Distilled water

culture temp

@refgrowthtypetemperature
1154positivegrowth37
67770positivegrowth37

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
1154anaerobe
69480anaerobe91.757

murein

  • @ref: 1154
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose-builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose+builds acid from
683676731melezitose-builds acid from
6836716024D-mannose+builds acid from
6836717057cellobiose+builds acid from
6836717754glycerol-builds acid from
683675291gelatin-hydrolysis
6836730849L-arabinose+builds acid from
6836765327D-xylose-builds acid from
6836717814salicin+builds acid from
6836717306maltose+builds acid from
6836717992sucrose+builds acid from
6836717716lactose+builds acid from
6836716899D-mannitol+builds acid from
6836717634D-glucose+builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6836735581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836735581indole-

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRE
1154--++++++-+-+/--++-+---

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
1154--++--+/---+/--------------------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
1154bovine rumenUSAUSANorth America
67770Bovine rumen

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body-Site#Organ#Rumen

Safety information

risk assessment

  • @ref: 1154
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Selenomonas ruminantium DNA for 16S rRNA, partial sequenceAB0033791455nuccore971
1154Selenomonas ruminantium strain DSM2872 16S ribosomal RNA gene, partial sequenceAF3730221502nuccore971
67770Selenomonas ruminantium subsp. lactilytica gene for 16S ribosomal RNA, partial sequence, strain: JCM 6582LC0372091422nuccore114197

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Selenomonas ruminantium DSM 2872GCA_900107615scaffoldncbi971
66792Selenomonas ruminantium strain DSM 2872971.19wgspatric971
66792Selenomonas ruminantium lactilytica DSM 28722593339219draftimg971

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno89no
69480gram-positivegram-positivePositive reaction to Gram-stainingno87.863no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes91.757no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no94.24no
69480spore-formingspore-formingAbility to form endo- or exosporesno69.083no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno82.669yes
69480flagellatedmotile2+Ability to perform flagellated movementyes65.451no

External links

@ref: 1154

culture collection no.: DSM 2872, ATCC 19205, JCM 6582

straininfo link

  • @ref: 86154
  • straininfo: 36898

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1154Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2872)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2872
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
86154Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID36898.1StrainInfo: A central database for resolving microbial strain identifiers