Strain identifier
BacDive ID: 17151
Type strain: 
Species: Schwartzia succinivorans
Strain Designation: S1-1
Strain history: <- N. O. van Gylswyk, Swedish Univ. Agric. Sci., Uppsala, Sweden; S1-1 <- N. O. van Gylswyk {1995}
NCBI tax ID(s): 1123243 (strain), 55507 (species)
version 8.1 (current version)
General
@ref: 3947
BacDive-ID: 17151
DSM-Number: 10502
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative
description: Schwartzia succinivorans S1-1 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from rumen, cow.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 55507 | species |
| 1123243 | strain |
strain history
- @ref: 3947
- history: <- N. O. van Gylswyk, Swedish Univ. Agric. Sci., Uppsala, Sweden; S1-1 <- N. O. van Gylswyk {1995}
doi: 10.13145/bacdive17151.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Selenomonadales
- family: Selenomonadaceae
- genus: Schwartzia
- species: Schwartzia succinivorans
- full scientific name: Schwartzia succinivorans van Gylswyk et al. 1997
@ref: 3947
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Selenomonadales
family: Selenomonadaceae
genus: Schwartzia
species: Schwartzia succinivorans
full scientific name: Schwartzia succinivorans van Gylswyk et al. 1997
strain designation: S1-1
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.757
Culture and growth conditions
culture medium
- @ref: 3947
- name: SUCCINICLASTICUM MEDIUM (DSMZ Medium 666)
- growth: yes
- link: https://mediadive.dsmz.de/medium/666
- composition: Name: SUCCINICLASTICUM MEDIUM (DSMZ Medium 666) Composition: NaHCO3 6.4 g/l Yeast extract 5.0 g/l Disodium succinate 5.0 g/l NaCl 0.45 g/l (NH4)2SO4 0.45 g/l L-Cysteine HCl x H2O 0.3 g/l Na2S x 9 H2O 0.3 g/l KH2PO4 0.23 g/l K2HPO4 0.23 g/l MgSO4 x 7 H2O 0.09 g/l CaCl2 x 2 H2O 0.06 g/l Indigocarmine 0.005 g/l Rumen fluid Distilled water
culture temp
- @ref: 3947
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 3947 | anaerobe | |
| 69480 | anaerobe | 100 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 94 |
| 69480 | no | 98.808 |
Isolation, sampling and environmental information
isolation
- @ref: 3947
- sample type: rumen, cow
- country: Sweden
- origin.country: SWE
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Host Body-Site | #Organ | #Rumen |
taxonmaps
- @ref: 69479
- File name: preview.99_61187.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16000;96_14387;97_17547;98_21804;99_61187&stattab=map
- Last taxonomy: Schwartzia succinivorans subclade
- 16S sequence: Y09434
- Sequence Identity:
- Total samples: 1105
- soil counts: 2
- aquatic counts: 3
- animal counts: 1095
- plant counts: 5
Safety information
risk assessment
- @ref: 3947
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 3947
- description: S.succinivorans 16S rRNA gene, partial
- accession: Y09434
- length: 1489
- database: ena
- NCBI tax ID: 55507
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Schwartzia succinivorans DSM 10502 | GCA_900129225 | scaffold | ncbi | 1123243 |
| 66792 | Schwartzia succinivorans DSM 10502 strain DSM 10502 | 1123243.3 | wgs | patric | 1123243 |
| 66792 | Schwartzia succinivorans DSM 10502 | 2582581261 | draft | img | 1123243 |
GC content
- @ref: 3947
- GC-content: 46
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 94 | no |
| motile | yes | 80.024 | no |
| flagellated | no | 71.164 | no |
| gram-positive | no | 97.559 | no |
| anaerobic | yes | 99.999 | yes |
| aerobic | no | 98.451 | yes |
| halophile | no | 96.16 | no |
| spore-forming | no | 76.917 | no |
| thermophile | no | 91.629 | yes |
| glucose-util | no | 50 | no |
| glucose-ferment | no | 59.373 | no |
External links
@ref: 3947
culture collection no.: DSM 10502
straininfo link
- @ref: 86150
- straininfo: 48833
literature
- topic: Metabolism
- Pubmed-ID: 8995818
- title: Schwartzia succinivorans gen. nov., sp. nov., another ruminal bacterium utilizing succinate as the sole energy source.
- authors: van Gylswyk NO, Hippe H, Rainey FA
- journal: Int J Syst Bacteriol
- DOI: 10.1099/00207713-47-1-155
- year: 1997
- mesh: Amino Acids/metabolism, Animals, Base Composition, Cattle, Fatty Acids/analysis, Fermentation, Flagella, Fumarates/metabolism, Gram-Negative Anaerobic Bacteria/chemistry/*classification/growth & development/*metabolism, Molecular Sequence Data, Peptides/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Rumen/*microbiology, Succinates/*metabolism, Yeasts/metabolism
- topic2: Phylogeny
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 3947 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10502) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10502 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 86150 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48833.1 | StrainInfo: A central database for resolving microbial strain identifiers |