Strain identifier
BacDive ID: 17140
Type strain: 
Species: Pectinatus sp.
Strain Designation: KO 1
Strain history: <- H. Seidel, KO 1
NCBI tax ID(s): 220670 (species)
version 8.1 (current version)
General
@ref: 9071
BacDive-ID: 17140
DSM-Number: 20764
keywords: genome sequence, Bacteria, anaerobe, mesophilic
description: Pectinatus sp. KO 1 is an anaerobe, mesophilic bacterium that was isolated from spoilt beer.
NCBI tax id
- NCBI tax id: 220670
- Matching level: species
strain history
- @ref: 9071
- history: <- H. Seidel, KO 1
doi: 10.13145/bacdive17140.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Negativicutes
- order: Selenomonadales
- family: Selenomonadaceae
- genus: Pectinatus
- species: Pectinatus sp.
- full scientific name: Pectinatus Lee et al. 1978 (Approved Lists 1980)
@ref: 9071
domain: Bacteria
phylum: Firmicutes
class: Negativicutes
order: Selenomonadales
family: Selenomonadaceae
genus: Pectinatus
species: Pectinatus sp.
full scientific name: Pectinatus sp.
strain designation: KO 1
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 9071 | BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) | yes | https://mediadive.dsmz.de/medium/58 | Name: BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58) Composition: Glucose 10.0 g/l Casein peptone 10.0 g/l Bacto Soytone 5.0 g/l Meat extract 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l MnSO4 x H2O 0.05 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Tween 80 Resazurin Distilled water |
| 9071 | MRS pre-reduced (DSMZ Medium 11b) | yes | https://mediadive.dsmz.de/medium/11b | Name: MRS MEDIUM (pre-reduced) (DSMZ Medium 11b) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Resazurin 0.001 g/l Distilled water |
culture temp
- @ref: 9071
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 9071
- oxygen tolerance: anaerobe
murein
- @ref: 9071
- murein short key: A31
- type: A1gamma m-Dpm-direct
Isolation, sampling and environmental information
isolation
- @ref: 9071
- sample type: spoilt beer
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Fermented |
| #Environmental | #Microbial community | |
| #Engineered | #Food production | #Beverage |
Sequence information
Genome sequences
- @ref: 66792
- description: Pectinatus haikarae strain MB233
- accession: 349096.3
- assembly level: wgs
- database: patric
- NCBI tax ID: 349096
GC content
- @ref: 9071
- GC-content: 42.0
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | no | 94.582 | no |
| anaerobic | yes | 99.264 | yes |
| halophile | no | 97.613 | no |
| spore-forming | no | 83.659 | no |
| glucose-util | yes | 86.039 | no |
| motile | yes | 84.881 | no |
| flagellated | no | 63.842 | no |
| aerobic | no | 97.128 | yes |
| thermophile | no | 93.141 | no |
| glucose-ferment | yes | 55.944 | no |
External links
@ref: 9071
culture collection no.: DSM 20764
straininfo link
- @ref: 86139
- straininfo: 49682
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 9071 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20764) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20764 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 86139 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49682.1 | StrainInfo: A central database for resolving microbial strain identifiers |